DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0000717
Gene2700049A03Rik
Synonymstalpid3
Desc.RIKEN cDNA 2700049A03 gene
LocusNM_029818 chr12:72237835-72344290(+)
NM_001163378 chr12:72237835-72344290(+)
DB links


Entrez 76967
MGI 1924217
Ensembl ENSMUSG00000034601
Vega OTTMUSG00000033139
Featureprotein-coding
GO(BP)
  •   1 Terms
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2000641
(v2.0)
2700049A03RikNM_001163378,NM_02981876967
2.6184892.55116.17920.29998.890613.486183.6221191.38689.342852.82352
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0000717
(v1.0)
2700049A03Rik76967
Maternal RNA0.96326
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2000641
(v2.0)
2700049A03Rik76967
695/3990.2872511/3990.2402209/3992.6318589/3991.886519/399-2.275597/399-2.6209
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2000641
(v2.0)
2700049A03Rik76967
309/1560.4707244/1560.5263205/1563.8941543/1563.11037/156-2.265649/156-2.2353
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2000641
(v2.0)
2700049A03Rik76967
67.696515942.58
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2000641
(v2.0)
2700049A03Rik76967
9.3637989.55
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0000717
(v1.0)
2700049A03RikNM_001163378,NM_02981876967
96.187580.318115.10816.159242.5586
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0000717
(v1.0)
2700049A03RikNM_001163378,NM_02981876967
791.873538.037103.83852.960325.1699
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0000717
(v1.0)
2700049A03RikNM_001163378,NM_02981876967
100.5730.9573687.6287
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0000717
(v1.0)
2700049A03RikNM_001163378,NM_02981876967
98.16979.511667.6821
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0000717
(v1.0)
2700049A03RikNM_001163378,NM_02981876967
287.9363.811
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0000717
(v1.0)
2700049A03RikNM_001163378,NM_02981876967
100.6310.94424974.2315
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0000717
(v1.0)
2700049A03RikNM_001163378,NM_02981876967
13.98775.946996.50074
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0000717
(v1.0)
2700049A03RikNM_001163378,NM_02981876967
31.266359.93
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0000717
(v1.0)
2700049A03RikNM_001163378,NM_02981876967
67.38046.15208
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0000717
(v1.0)
2700049A03RikNM_001163378,NM_02981876967
29.429929.0974
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0000717
(v1.0)
1273C0192C01-3Mm.872902700049A03Rik76967
U014051NAP002620-001TC915312Q9CZN0U,F,23.61323.71762.74232.58692.35022.66322.6964
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0000717
(v1.0)
1429595_atMm.872902700049A03RikNM_001163378.1,NM_029818.176967
3002.12362.475930.400
0000717
(v1.0)
1437248_atMm.872902700049A03RikNM_001163378.1,NM_029818.176967
1442.6752241.325485.3500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0000717
(v1.0)
A_51_P1185352700049A03RikAK01239976967
11P1.6610.124P
0000717
(v1.0)
A_51_P1185392700049A03RikAK01239976967
11P1.2480.269P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0000717
(v1.0)
2700049A03Rik76967
010010