DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0001929
GeneAbcf1
SynonymsAbc50
D17Wsu166e
GCN20
Desc.ATP-binding cassette, sub-family F (GCN20), member 1
LocusNM_013854 chr17:36093764-36106695(-)
DB links


Entrez 224742
MGI 1351658
Ensembl ENSMUSG00000038762
Vega OTTMUSG00000037427
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2001807
(v2.0)
Abcf1NM_013854224742
57.797729.432729.3398130.455178.26562.42638.00131.598137.10465.5618
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0001929
(v1.0)
Abcf1224742
Major ZGA0.98714
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2001807
(v2.0)
Abcf1224742
720/4410.194470/441-0.0243710/4414.2511566/4413.152214/441-2.8335103/441-2.6797
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2001807
(v2.0)
Abcf1224742
361/1980.3521231/1980.1057683/1985.30381480/1984.21617/198-2.601657/198-2.3652
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2001807
(v2.0)
Abcf1224742
77.859214454.07
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2001807
(v2.0)
Abcf1224742
11.21617215.58
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0001929
(v1.0)
Abcf1NM_013854224742
30.597620.424997.0231123.54126.7845
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0001929
(v1.0)
Abcf1FR210204,NM_013854,NR_030608224742
355.323182.2691092.291352.84316.391
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0001929
(v1.0)
Abcf1NM_013854224742
31.992621.137222.284
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0001929
(v1.0)
Abcf1NM_013854224742
31.22820.219823.4725
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0001929
(v1.0)
Abcf1FR210204,NM_013854,NR_030608224742
284.9219.123
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0001929
(v1.0)
Abcf1NM_013854224742
32.011220.847725.7439
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0001929
(v1.0)
Abcf1NM_013854224742
89.8283119.28495.1287
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0001929
(v1.0)
Abcf1FR210204,NM_013854224742
2260.062318.58
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0001929
(v1.0)
Abcf1NM_013854224742
22.295356.2978
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0001929
(v1.0)
Abcf1NM_013854224742
6.074046.72627
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0001929
(v1.0)
6308H3022G10-3LOC224742224742
U043883NAP094438-001TC857997,TC857996Q9JL47U,F,23.93153.81384.07394.53334.5364.30714.4773
0001929
(v1.0)
6599H3029B04-5LOC224742224742
U043883NAP002303-001TC857997Q9JL47U,F,22.73152.92492.86923.01472.7033.0092.8657
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0001929
(v1.0)
1420157_s_atMm.329022Abcf1NM_013854.1224742
226.075121.95630.95978.75467.4
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0001929
(v1.0)
A_51_P107234Abcf1NM_013854224742
11P1.3070.228P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0001929
(v1.0)
Abcf1224742
101101