DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003049
GeneAtp2a2
SynonymsD5Wsu150e
sarco/endoplasmic reticulum Ca2+-ATPase 2
SERCA2
SERCA2B
Desc.ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
LocusNR_027838 chr5:122903522-122952234(-)
NM_009722 chr5:122903522-122952234(-)
NM_001110140 chr5:122906333-122952234(-)
DB links


Entrez 11938
MGI 88110
Ensembl ENSMUSG00000029467
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   7 Terms
      Calcium signaling pathway (mmu04020)
      Cardiac muscle contraction (mmu04260)
      Pancreatic secretion (mmu04972)
      Alzheimer's disease (mmu05010)
      Hypertrophic cardiomyopathy (HCM) (mmu05410)
      Arrhythmogenic right ventricular cardiomyopathy (ARVC) (mmu05412)
      Dilated cardiomyopathy (mmu05414)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002954
(v2.0)
Atp2a2NM_009722,NR_02783811938
67.6232219.562372.218128.18769.298948.363524.1384417.582.923148.3634
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003049
(v1.0)
Atp2a211938
Minor ZGA0.97996
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002954
(v2.0)
Atp2a211938
758/3710.5168446/3710.149168/3712.4202372/3711.329328/371-1.6356229/371-1.2898
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002954
(v2.0)
Atp2a211938
481/1611.0615214/1610.2927161/1613.5052342/1612.40019/161-1.988126/161-0.9447
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002954
(v2.0)
Atp2a211938
60.439614142.86
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002954
(v2.0)
Atp2a211938
18.98349619.77
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003049
(v1.0)
Atp2a2NM_001110140,NM_00972211938
264.544296.906109.57456.188521.2709
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003049
(v1.0)
Atp2a2FR077314,FR204651,NM_009722,NR_02783811938
578.424533.771186.483119.31946.4888
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003049
(v1.0)
Atp2a2NM_001110140,NM_00972211938
276.60527.244323.931
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003049
(v1.0)
Atp2a2NM_001110140,NM_00972211938
269.994293.925329.976
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003049
(v1.0)
Atp2a2FR077314,FR204651,NM_009722,NR_02783811938
662.756946.95
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003049
(v1.0)
Atp2a2NM_001110140,NM_00972211938
276.76626.8708361.906
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003049
(v1.0)
Atp2a2NM_001110140,NM_00972211938
101.44954.252264.9631
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003049
(v1.0)
Atp2a2FR077314,FR204651,NM_009722,NR_02783811938
116.214148.889
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003049
(v1.0)
Atp2a2NM_001110140,NM_00972211938
209.98752.2975
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003049
(v1.0)
Atp2a2NM_001110140,NM_00972211938
76.443589.2281
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003049
(v1.0)
464C0110C02-3Mm.42255Atp2a211938
4.39574.26963.47263.7173.49523.60323.4722
0003049
(v1.0)
11185H3109F07-3Mm.42255Atp2a211938
U026698NAP104096-1Atp2a2;TC799450,TC799449,TC799447O54994U,F,23.31243.03012.60632.41653.07332.99422.9927
0003049
(v1.0)
16721K0446B11-3Mm.42255Atp2a211938
Atp2a22.98952.9492.88762.90092.90482.92612.8414
0003049
(v1.0)
18480L0209B04-3Mm.42255Atp2a211938
Atp2a23.11252.85832.81672.72982.2712.56032.3489
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003049
(v1.0)
1416551_atMm.227583Atp2a2NM_001110140.3,NM_009722.311938
250414.65212.2250119.7
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003049
(v1.0)
A_51_P451075Atp2a2NM_00972211938
11P0.3560.0621P
0003049
(v1.0)
A_52_P168097Atp2a2NM_00972211938
11P0.8540.436P
0003049
(v1.0)
A_52_P569001Atp2a2AK22053811938
11P0.7290.195P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003049
(v1.0)
Atp2a211938
10169132716