DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003055
GeneAtp2c1
SynonymsATP2C1A
PMR1
SPCA
Desc.ATPase, Ca++-sequestering
LocusNM_175025 chr9:105313692-105397463(-)
NM_001253834 chr9:105313692-105397463(-)
NM_001253831 chr9:105313692-105423587(-)
NM_001253836 chr9:105325097-105397463(-)
DB links


Entrez 235574
MGI 1889008
Ensembl ENSMUSG00000032570
Vega OTTMUSG00000042223
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002960
(v2.0)
Atp2c1NM_001253831,NM_001253834,NM_001253836,NM_175025235574
13.3108154.332166.19169.925424.94637.6580121.675132.86320.68515.88563
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003055
(v1.0)
Atp2c1235574
Maternal RNA0.95882
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002960
(v2.0)
Atp2c1235574
763/3870.4655573/3870.449784/3874.57692210/3873.836264/387-0.5315450/387-0.3806
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002960
(v2.0)
Atp2c1235574
454/1860.7714311/1860.6227747/1865.51761928/1864.686411/186-1.9283139/186-1.0117
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002960
(v2.0)
Atp2c1235574
68.231614547.06
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002960
(v2.0)
Atp2c1235574
17.74298919.94
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003055
(v1.0)
Atp2c1NM_175025235574
128.05179.795537.286912.753512.4259
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003055
(v1.0)
Atp2c1FR001612,FR035016,NM_175025235574
1124.89839.675452.091142.902119.339
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003055
(v1.0)
Atp2c1NM_175025235574
133.8893.5987.0586
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003055
(v1.0)
Atp2c1NM_175025235574
130.68978.994359.0723
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003055
(v1.0)
Atp2c1FR001612,FR035016,NM_175025235574
2365.672088.58
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003055
(v1.0)
Atp2c1NM_175025235574
133.9673.5408364.7885
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003055
(v1.0)
Atp2c1NM_175025235574
34.521912.314110.1128
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003055
(v1.0)
Atp2c1FR001612,FR035016,NM_175025235574
397.351364.735
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003055
(v1.0)
Atp2c1NM_175025235574
77.742222.8928
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003055
(v1.0)
Atp2c1NM_175025235574
14.601853.1221
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003055
(v1.0)
1434386_atMm.326247Atp2c1NM_175025.3235574
939.251146.125303.77500
0003055
(v1.0)
1437738_atMm.326247Atp2c1NM_175025.3235574
797.175987844.850107.1
0003055
(v1.0)
1431196_atMm.326247Atp2c1NM_175025.3235574
0634.2539.3500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003055
(v1.0)
A_51_P204630Atp2c1AK032255235574
11P1.6180.135P
0003055
(v1.0)
A_52_P121812Atp2c1NM_175025235574
11P1.2030.317P
0003055
(v1.0)
A_52_P397722Atp2c1NM_175025235574
11P0.6720.221P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003055
(v1.0)
Atp2c1235574
7.3310512165