DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003060
GeneAtp5b
Synonyms
Desc.ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
LocusNM_016774 chr10:127520363-127527444(+)
DB links


Entrez 11947
MGI 107801
Ensembl ENSMUSG00000025393
Vega OTTMUSG00000023688
Featureprotein-coding
GO(BP)
GO(MF)
  •   12 Terms
      nucleotide binding (GO:0000166)
      calcium ion binding (GO:0005509)
      ATP binding (GO:0005524)
      hydrolase activity (GO:0016787)
      hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances (GO:0016820)
      ATPase activity (GO:0016887)
      nucleoside-triphosphatase activity (GO:0017111)
      lipoprotein particle receptor activity (GO:0030228)
      MHC class I protein binding (GO:0042288)
      eukaryotic cell surface binding (GO:0043499)
      hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933)
      proton-transporting ATPase activity, rotational mechanism (GO:0046961)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2002965
(v2.0)
Atp5bNM_01677411947
318.597180.603297.049293.295495.8311185.07638.056262.8464.8031230.99
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003060
(v1.0)
Atp5b11947
Major ZGA0.94659
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002965
(v2.0)
Atp5b11947
608/4200.0208419/420-0.1193254/4202.8401887/4202.402813/420-2.863393/420-2.7546
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2002965
(v2.0)
Atp5b11947
306/1860.2044173/186-0.2195219/1863.7521644/1863.10596/186-2.70638/186-2.8419
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002965
(v2.0)
Atp5b11947
56.013513043.09
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2002965
(v2.0)
Atp5b11947
21.25289123.35
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003060
(v1.0)
Atp5bNM_01677411947
187.735206.284218.391343.782454.521
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003060
(v1.0)
Atp5bNM_01677411947
267.793249.246296.56453.207591.815
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003060
(v1.0)
Atp5bNM_01677411947
196.294116.514225.06
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003060
(v1.0)
Atp5bNM_01677411947
191.603204.212194.983
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003060
(v1.0)
Atp5bNM_01677411947
330.139330.965
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003060
(v1.0)
Atp5bNM_01677411947
196.408114.918213.851
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003060
(v1.0)
Atp5bNM_01677411947
202.196331.935320.814
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003060
(v1.0)
Atp5bNM_01677411947
462.549427.799
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003060
(v1.0)
Atp5bNM_01677411947
60.2667373.587
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003060
(v1.0)
Atp5bNM_01677411947
189.967133.848
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003060
(v1.0)
1743C0248F10-3Mm.103838Atp5b11947
TC8466473.74983.95754.1924.10753.71263.97443.9529
0003060
(v1.0)
11756H3122F01-3Mm.103838Atp5b11947
U012171NAP093565-001Atp5b;TC846709,TC846694,TC846642,TC846624P56480U,F,24.20664.2473.98294.43713.85924.30114.2164
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003060
(v1.0)
1416829_atMm.238973Atp5bNM_016774.311947
976.5251013.1251358.11588.43050.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003060
(v1.0)
A_51_P207636Atp5bNM_01677411947
11P0.3370.0685P
0003060
(v1.0)
A_52_P328078Atp5bNM_01677411947
11P0.8980.477P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003060
(v1.0)
Atp5b11947
303930164191114