DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003590
GeneBrcc3
SynonymsC6.1A
Desc.BRCA1/BRCA2-containing complex, subunit 3
LocusNM_145956 chrX:72661967-72699340(+)
NM_001166459 chrX:72661967-72701040(+)
NM_001166457 chrX:72661967-72699340(+)
DB links


Entrez 210766
MGI 2389572
Ensembl ENSMUSG00000031201
Vega OTTMUSG00000020858
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003472
(v2.0)
Brcc3NM_001166457,NM_001166459,NM_145956210766
11.6211.497716.86855.679757.315675.6142217.695914.761612.38065.99336
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003590
(v1.0)
Brcc3210766
Minor ZGA0.96008
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003472
(v2.0)
Brcc3210766
321/1770.3443273/1770.506598/1772.6672277/1771.96238/177-2.273442/177-2.6316
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003472
(v2.0)
Brcc3210766
169/830.5079123/830.446795/833.6141262/832.95213/83-2.387919/83-2.6331
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003472
(v2.0)
Brcc3210766
25.82787235.87
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003472
(v2.0)
Brcc3210766
9.08895416.83
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003590
(v1.0)
Brcc3NM_001166457,NM_001166459,NM_145956210766
11.94711.64634.237055.0706712.4341
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003590
(v1.0)
Brcc3FR088874,NM_001166457,NM_001166459,NM_145956210766
24.5055141.8796.0063111.990224.0635
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003590
(v1.0)
Brcc3NM_001166457,NM_001166459,NM_145956210766
12.49174.2496812.7064
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003590
(v1.0)
Brcc3NM_001166457,NM_001166459,NM_145956210766
12.193211.529410.9094
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003590
(v1.0)
Brcc3FR088874,NM_001166457,NM_001166459,NM_145956210766
222.29355.116
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003590
(v1.0)
Brcc3NM_001166457,NM_001166459,NM_145956210766
12.4994.1914711.9651
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003590
(v1.0)
Brcc3NM_001166457,NM_001166459,NM_145956210766
3.922854.895938.58232
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003590
(v1.0)
Brcc3FR088874,NM_001166457,NM_001166459,NM_145956210766
42.557521.7104
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003590
(v1.0)
Brcc3NM_001166457,NM_001166459,NM_145956210766
6.395249.66712
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003590
(v1.0)
Brcc3NM_001166457,NM_001166459,NM_145956210766
1.566221.73104
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003590
(v1.0)
1578C0229C01-3C6.1A-pending210766
U041814NAP027198-1C6.1A;Tcra;TC869974,TC869972,TC827461,TC816283P467373.2023.15163.14783.11553.10673.20323.1698
0003590
(v1.0)
1609C0233A05-3Mm.226957C6.1A-pending210766
C6.1A-pending2.66292.87533.04362.83482.63842.92932.8243
0003590
(v1.0)
12082H3132F07-3Mm.226957C6.1A-pending210766
U003483NAP037507-14933434E20Rik;5730552F22Rik;TC888748Q9D9D9U,F,23.2943.22063.15723.08473.55913.32333.4577
0003590
(v1.0)
14244J0427G04-3Mm.226957C6.1A-pending210766
3.29183.11683.26823.14583.46413.31443.3508
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003590
(v1.0)
1452128_a_atMm.226957Brcc3NM_001166457.1,NM_145956.4,NM_001166459.1210766
272.525164.70175.85292.625
0003590
(v1.0)
1437553_atMm.226957Brcc3NM_001166457.1,NM_145956.4,NM_001166459.1210766
000026.35
0003590
(v1.0)
1447778_x_atMm.226957Brcc3NM_001166457.1,NM_145956.4,NM_001166459.1210766
1251.60000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003590
(v1.0)
A_51_P373461MGI:2389572NM_145956210766
11P1.0970.62P
Proteome N/A