DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0003854

Gene

Calm3

Synonyms

Description

calmodulin 3

Locus

NM_007590 UCSC: chr7:17500728-17509381(-) OLP: chr7:17500728-17509381(-)

DB links

Entrez 12315
MGI 103249
Ensembl ENSMUSG00000019370
Vega OTTMUSG00000022550

Feature

protein-coding

GO_BP

1 Terms

GO_MF

1 Terms

GO_CC

KEGG

15 Terms

see DBTMEE:2003743 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0003854 (v1.0)	Calm3	NM_007590	12315	17.7795	17.8078	19.8215	14.6988	94.3269

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0003854 (v1.0)	Calm3	NM_007590	12315	18.59	40.3239	19.4287

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0003854 (v1.0)	Calm3	NM_007590	12315	18.1457	17.629	25.4755

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0003854 (v1.0)	Calm3	NM_007590	12315	18.6009	39.7716	27.9407

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0003854 (v1.0)	Calm3	NM_007590	12315	18.3516	14.1923	16.007

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0003854 (v1.0)	Calm3	NM_007590	12315	19.6916	26.4878

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0003854 (v1.0)	Calm3	NM_007590	12315	0	0.0269359

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0003854 (v1.0)	885	C0155F06-3	Mm.1147	Calm3	12315	U028195	NAP032292-1	Calm3;	TC824623,TC824618	P02593		3.0439	3.0635	3.2397	3.3855	3.5237	3.5405	3.8072

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0003854 (v1.0)	1417366_s_at	Mm.285993~Mm.329243~Mm.288630	Calm1~Calm2~Calm3	NM_009790.4~NM_007589.5~NM_007590.3	12313 12314 12315	272.375	501.85	166.55	74.35	365.925
0003854 (v1.0)	1422414_a_at	Mm.285993~Mm.329243~Mm.288630	Calm1~Calm2~Calm3	NM_009790.4~NM_007589.5~NM_007590.3	12313 12314 12315	612.975	322.675	657.45	215.3	845.625
0003854 (v1.0)	1450864_at	Mm.285993~Mm.329243~Mm.288630	Calm1~Calm2~Calm3	NM_009790.4~NM_007589.5~NM_007590.3	12313 12314 12315	31.4	0	104.325	108.775	190.525
0003854 (v1.0)	1423807_a_at	Mm.285993~Mm.329243~Mm.288630	Calm1~Calm2~Calm3	NM_009790.4~NM_007589.5~NM_007590.3	12313 12314 12315	3555.48	1023.55	4041.68	2270.8	5037.35
0003854 (v1.0)	1426710_at	Mm.288630	Calm3	NM_007590.3	12315	0	0	58.925	0	132.725

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0003854 (v1.0)	A_51_P384499	Calm3	NM_007590	12315	1	1	P	0.634	0.155	P
0003854 (v1.0)	A_52_P1157979	Calm3	NM_007590	12315	1	1	P	0.06	0.0226	P
0003854 (v1.0)	A_52_P140356	Calm3	NM_007590	12315	1	1	P	0.54	0.136	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0003854 (v1.0)	Calm3	12315	9	11	5	30	42	7