DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0003854
GeneCalm3
Synonyms
Desc.calmodulin 3
LocusNM_007590 chr7:17500728-17509381(-)
DB links


Entrez 12315
MGI 103249
Ensembl ENSMUSG00000019370
Vega OTTMUSG00000022550
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2003743
(v2.0)
Calm3NM_00759012315
110.26217.098425.549526.615721.1692224.196132.86934.351123.1461268.073
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0003854
(v1.0)
Calm312315
Minor ZGA0.83219
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003743
(v2.0)
Calm312315
741/4360.2518377/436-0.3251237/4362.6881666/4361.936313/436-2.9168192/436-1.7745
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2003743
(v2.0)
Calm312315
379/1780.5748173/178-0.1564217/1783.7984575/1783.00523/178-3.451380/178-1.7342
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003743
(v2.0)
Calm312315
70.471914648.27
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2003743
(v2.0)
Calm312315
15.89738917.86
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003854
(v1.0)
Calm3NM_00759012315
17.779517.807819.821514.698894.3269
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0003854
(v1.0)
Calm3NM_00759012315
47.853637.371768.889585.3111191.687
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0003854
(v1.0)
Calm3NM_00759012315
18.5940.323919.4287
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0003854
(v1.0)
Calm3NM_00759012315
18.145717.62925.4755
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0003854
(v1.0)
Calm3NM_00759012315
54.541485.4186
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0003854
(v1.0)
Calm3NM_00759012315
18.600939.771627.9407
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0003854
(v1.0)
Calm3NM_00759012315
18.351614.192316.007
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0003854
(v1.0)
Calm3NM_00759012315
88.663109.68
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0003854
(v1.0)
Calm3NM_00759012315
19.691626.4878
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0003854
(v1.0)
Calm3NM_00759012315
00.0269359
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0003854
(v1.0)
885C0155F06-3Mm.1147Calm312315
U028195NAP032292-1Calm3;TC824623,TC824618P025933.04393.06353.23973.38553.52373.54053.8072
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0003854
(v1.0)
1417366_s_atMm.285993~Mm.329243~Mm.288630Calm1~Calm2~Calm3NM_009790.4~NM_007589.5~NM_007590.312313
12314
12315
272.375501.85166.5574.35365.925
0003854
(v1.0)
1422414_a_atMm.285993~Mm.329243~Mm.288630Calm1~Calm2~Calm3NM_009790.4~NM_007589.5~NM_007590.312313
12314
12315
612.975322.675657.45215.3845.625
0003854
(v1.0)
1450864_atMm.285993~Mm.329243~Mm.288630Calm1~Calm2~Calm3NM_009790.4~NM_007589.5~NM_007590.312313
12314
12315
31.40104.325108.775190.525
0003854
(v1.0)
1423807_a_atMm.285993~Mm.329243~Mm.288630Calm1~Calm2~Calm3NM_009790.4~NM_007589.5~NM_007590.312313
12314
12315
3555.4751023.554041.6752270.85037.35
0003854
(v1.0)
1426710_atMm.288630Calm3NM_007590.312315
0058.9250132.725
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0003854
(v1.0)
A_51_P384499Calm3NM_00759012315
11P0.6340.155P
0003854
(v1.0)
A_52_P1157979Calm3NM_00759012315
11P0.060.0226P
0003854
(v1.0)
A_52_P140356Calm3NM_00759012315
11P0.540.136P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0003854
(v1.0)
Calm312315
911530427