DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004112
GeneCcdc47
Synonymsasp4
calumin
Desc.coiled-coil domain containing 47
LocusNM_026009 chr11:106060670-106077681(-)
DB links


Entrez 67163
MGI 1914413
Ensembl ENSMUSG00000078622
Vega OTTMUSG00000003221
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004001
(v2.0)
Ccdc47NM_02600967163
23.491660.491977.754728.235218.230229.196831.744755.342120.283227.7538
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004112
(v1.0)
Ccdc4767163
Minor ZGA0.96354
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004001
(v2.0)
Ccdc4767163
703/3880.3439513/3880.286292/3883.1515832/3882.42429/388-3.235679/388-2.8718
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004001
(v2.0)
Ccdc4767163
337/1740.4387223/1740.2405275/1744.1694738/1743.39717/174-2.419340/174-2.675
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004001
(v2.0)
Ccdc4767163
62.481515939.3
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004001
(v2.0)
Ccdc4767163
18.1111216.17
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004112
(v1.0)
Ccdc47NM_02600967163
62.859553.701521.010512.634422.3484
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004112
(v1.0)
Ccdc47NM_02600967163
731.269483.936256.7196.904209.107
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004112
(v1.0)
Ccdc47NM_02600967163
65.72548.591158.5895
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004112
(v1.0)
Ccdc47NM_02600967163
64.154553.162241.0074
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004112
(v1.0)
Ccdc47NM_02600967163
161.829119.715
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004112
(v1.0)
Ccdc47NM_02600967163
65.76358.4734344.9756
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004112
(v1.0)
Ccdc47NM_02600967163
19.452512.19914.0285
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004112
(v1.0)
Ccdc47NM_02600967163
181.946196.037
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004112
(v1.0)
Ccdc47NM_02600967163
134.35821.6052
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004112
(v1.0)
Ccdc47NM_02600967163
12.500220.1422
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004112
(v1.0)
1451420_atMm.22109Ccdc47NM_026009.267163
891.675832.975595304.925567.7
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004112
(v1.0)
A_51_P3770512610204L23RikNM_02600967163
11P0.4510.0796P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004112
(v1.0)
Ccdc4767163
22.670380