DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004114
GeneCcdc50
SynonymsD16Bwg1543e
Desc.coiled-coil domain containing 50
LocusNM_026202 chr16:27389063-27452304(+)
NM_001025615 chr16:27389063-27452304(+)
DB links


Entrez 67501
MGI 1914751
Ensembl ENSMUSG00000038127
Vega OTTMUSG00000023490
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004002
(v2.0)
Ccdc50NM_001025615,NM_001289436,NM_02620267501
14.830514.836130.466612.61835.692749.2043423.512523.82415.918158.81107
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004114
(v1.0)
Ccdc5067501
Minor ZGA0.9249
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004002
(v2.0)
Ccdc5067501
651/3690.3055462/3690.2075160/3692.3578482/3691.709929/369-1.579208/369-1.4198
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004002
(v2.0)
Ccdc5067501
306/1410.6015175/1410.1942150/1413.5808388/1412.76989/141-1.801881/141-1.3825
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004002
(v2.0)
Ccdc5067501
38.17847749.58
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004002
(v2.0)
Ccdc5067501
12.28434726.14
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004114
(v1.0)
Ccdc50NM_001025615,NM_02620267501
15.464121.11279.424593.9615616.5931
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004114
(v1.0)
Ccdc50FR165243,FR268904,NM_001025615,NM_02620267501
579.596837.611275.00465.7015135.803
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004114
(v1.0)
Ccdc50NM_001025615,NM_02620267501
16.16915.4403323.0344
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004114
(v1.0)
Ccdc50NM_001025615,NM_02620267501
15.782720.900717.6815
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004114
(v1.0)
Ccdc50FR165243,FR268904,NM_001025615,NM_02620267501
1049.28618.891
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004114
(v1.0)
Ccdc50NM_001025615,NM_02620267501
16.17855.3658219.3925
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004114
(v1.0)
Ccdc50NM_001025615,NM_02620267501
8.72573.825044.10647
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004114
(v1.0)
Ccdc50FR165243,FR268904,NM_001025615,NM_02620267501
39.571538.587
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004114
(v1.0)
Ccdc50NM_001025615,NM_02620267501
13.777.13622
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004114
(v1.0)
Ccdc50NM_001025615,NM_02620267501
5.375162.86907
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004114
(v1.0)
1420522_atMm.258985Ccdc50NM_026202.3,NM_001025615.267501
256.1290.05356.690.475103.2
0004114
(v1.0)
1431072_a_atMm.258985Ccdc50NM_026202.3,NM_001025615.267501
168.225139.5168.60109.05
0004114
(v1.0)
1433995_s_atMm.258985Ccdc50NM_026202.3,NM_001025615.267501
104.5250102.725136.55282.425
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004114
(v1.0)
A_51_P1074382610529H08RikNM_02620267501
11P0.9730.842P
0004114
(v1.0)
A_52_P1816052610529H08RikNM_02620267501
11P0.6890.204P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004114
(v1.0)
Ccdc5067501
100100