DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004468
GeneCdo1
SynonymsCdo
D18Ucla3
Desc.cysteine dioxygenase 1, cytosolic
LocusNM_033037 chr18:46872859-46887996(-)
DB links


Entrez 12583
MGI 105925
Ensembl ENSMUSG00000033022
Featureprotein-coding
GO(BP)
GO(MF)
  •   6 Terms
      iron ion binding (GO:0005506)
      ferrous iron binding (GO:0008198)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
      cysteine dioxygenase activity (GO:0017172)
      metal ion binding (GO:0046872)
GO(CC)
KEGG
  •   3 Terms
      Cysteine and methionine metabolism (mmu00270)
      Taurine and hypotaurine metabolism (mmu00430)
      Metabolic pathways (mmu01100)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004357
(v2.0)
Cdo1NM_03303712583
97.0776337.23533.0434.46377.4203518.24570.664932521.18316.49419.27555
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004468
(v1.0)
Cdo112583
Maternal RNA0.94662
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004357
(v2.0)
Cdo112583
675/4550.0561426/455-0.210729/455-0.3597178/455-0.0226186/4550.76181204/4550.8032
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004357
(v2.0)
Cdo112583
339/1920.3059179/192-0.216124/1920.5715155/1921.0129116/1921.3122821/1921.4921
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004357
(v2.0)
Cdo112583
58.467512746.04
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004357
(v2.0)
Cdo112583
15.06618118.6
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004468
(v1.0)
Cdo1NM_03303712583
350.476368.76125.67535.118590.468234
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004468
(v1.0)
Cdo1NM_03303712583
440.352417.87330.01096.034340.631267
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004468
(v1.0)
Cdo1NM_03303712583
366.45535.5023402.327
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004468
(v1.0)
Cdo1NM_03303712583
357.696365.059385.995
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004468
(v1.0)
Cdo1NM_03303712583
424.348441.736
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004468
(v1.0)
Cdo1NM_03303712583
366.66835.016423.346
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004468
(v1.0)
Cdo1NM_03303712583
23.77144.9422111.6182
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004468
(v1.0)
Cdo1NM_03303712583
5.9694614.0061
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004468
(v1.0)
Cdo1NM_03303712583
449.30579.8875
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004468
(v1.0)
Cdo1NM_03303712583
157.41346.4292
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004468
(v1.0)
8206H3061E04-3Mm.29996Cdo112583
U038412NAP006069-001Cdo1;TC874701,TC874700U,F,23.71973.70273.06742.85913.17572.86633.0412
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004468
(v1.0)
1448842_atMm.241056Cdo1NM_033037.312583
1144.351454.125942.9500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004468
(v1.0)
A_51_P489452Cdo1NM_03303712583
11P0.8440.339P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004468
(v1.0)
Cdo112583
45371710