DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004641
GeneChfr
SynonymsRNF116
Desc.checkpoint with forkhead and ring finger domains
LocusNM_172717 chr5:110564859-110600991(+)
DB links


Entrez 231600
MGI 2444898
Ensembl ENSMUSG00000014668
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004554
(v2.0)
ChfrNM_001289577,NM_001289578,NM_001289579,NM_001289580,NM_172717231600
11.556318.20938.58889.537127.5262614.58896.8643649.02517.7283114.9039
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004641
(v1.0)
Chfr231600
Minor ZGA0.97181
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004554
(v2.0)
Chfr231600
521/385-0.0762387/385-0.108498/3851.5969310/3851.013932/385-1.5021216/385-1.4268
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004554
(v2.0)
Chfr231600
222/1550.0054149/155-0.17297/1552.8309227/1551.864813/155-1.449293/155-1.3223
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004554
(v2.0)
Chfr231600
65.272913149.83
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004554
(v2.0)
Chfr231600
11.81757216.41
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004641
(v1.0)
ChfrNM_172717231600
18.979226.84037.063015.231444.84205
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004641
(v1.0)
ChfrFR102032,NM_172717231600
200.332262.30561.568349.194340.6061
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004641
(v1.0)
ChfrNM_172717231600
19.84454.0987629.2834
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004641
(v1.0)
ChfrNM_172717231600
19.370226.570836.2005
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004641
(v1.0)
ChfrFR102032,NM_172717231600
385.045449.166
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004641
(v1.0)
ChfrNM_172717231600
19.8564.0426239.7034
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004641
(v1.0)
ChfrNM_172717231600
6.539255.051165.32123
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004641
(v1.0)
ChfrFR102032,NM_172717231600
158.687413.169
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004641
(v1.0)
ChfrNM_172717231600
8.285955.06906
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004641
(v1.0)
ChfrNM_172717231600
16.039319.1767
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004641
(v1.0)
18568L0215B03-3Mm.30264C230082M18231600
U005967NAP095098-001TC874951,TC874949U,F,23.60983.44093.43473.33272.9573.12333.0227
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004641
(v1.0)
1433550_atMm.30264ChfrNM_172717.3231600
171.1374.375302.45108.45147.55
0004641
(v1.0)
1434529_x_atMm.30264ChfrNM_172717.3231600
137.8282.4252.87565.82576.925
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004641
(v1.0)
A_51_P253348ChfrNM_172717231600
11P0.9090.521P
Proteome N/A