DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004859
GeneClns1a
SynonymsClci
Clcni
ICLN
Desc.chloride channel, nucleotide-sensitive, 1A
LocusNM_023671 chr7:104845167-104869303(+)
DB links


Entrez 12729
MGI 109638
Ensembl ENSMUSG00000025439
Vega OTTMUSG00000024489
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004780
(v2.0)
Clns1aNM_02367112729
10.528712.946114.202346.3378115.39726.08716.978811.8117108.44334.9837
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004859
(v1.0)
Clns1a12729
MGA0.9969
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004780
(v2.0)
Clns1a12729
646/4110.1393465/4110.0617295/4113.0855753/4112.197923/411-2.0548129/411-2.2578
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004780
(v2.0)
Clns1a12729
329/2110.1274216/211-0.082284/2113.9541716/2113.07899/211-2.369657/211-2.4565
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004780
(v2.0)
Clns1a12729
63.406213546.97
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004780
(v2.0)
Clns1a12729
16.80318519.77
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004859
(v1.0)
Clns1aNM_02367112729
34.495625.184888.3088205.19530.9316
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004859
(v1.0)
Clns1aFR120768,NM_02367112729
29.156518.71769.9327160.30325.4183
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004859
(v1.0)
Clns1aNM_02367112729
36.06839.614127.4771
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004859
(v1.0)
Clns1aNM_02367112729
35.206224.931922.3523
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004859
(v1.0)
Clns1aFR120768,NM_02367112729
19.005919.3666
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004859
(v1.0)
Clns1aNM_02367112729
36.08939.4824224.5152
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004859
(v1.0)
Clns1aNM_02367112729
81.7602198.124192.133
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004859
(v1.0)
Clns1aFR120768,NM_02367112729
158.57163.592
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004859
(v1.0)
Clns1aNM_02367112729
24.431192.1894
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004859
(v1.0)
Clns1aNM_02367112729
10.85199.50576
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004859
(v1.0)
8377H3064F09-3Clns1a12729
U008419NAP093909-001Clns1a;TC804472Q61189U,F,22.57172.86733.06863.25182.87713.07212.7257
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004859
(v1.0)
1427548_a_atMm.21482Clns1aNM_023671.112729
111.775139.775215.6294.525145.1
0004859
(v1.0)
1423181_s_atMm.21482Clns1aNM_023671.112729
391.875322.425913.91664.1675.35
0004859
(v1.0)
1436935_x_atMm.21482Clns1aNM_023671.112729
1121.325793.8752082.6253650.151902.225
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004859
(v1.0)
A_51_P114854Clns1aNM_02367112729
11P0.9260.657P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004859
(v1.0)
Clns1a12729
100100