DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0004941
GeneCnot7
SynonymsCaf1
Desc.CCR4-NOT transcription complex, subunit 7
LocusNM_001271543 chr8:41577892-41597108(-)
NM_011135 chr8:41577892-41597108(-)
NM_001271542 chr8:41577892-41601201(-)
DB links


Entrez 18983
MGI 1298230
Ensembl ENSMUSG00000031601
Vega OTTMUSG00000026076
Featureprotein-coding
GO(BP)
  •   6 Terms
      nuclear-transcribed mRNA poly(A) tail shortening (GO:0000289)
      deadenylation-dependent decapping of nuclear-transcribed mRNA (GO:0000290)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      cytoplasmic mRNA processing body assembly (GO:0033962)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004868
(v2.0)
Cnot7NM_001271542,NM_001271543,NM_01113518983
15.1089146.601230.91161.92543.62628.721519.6002183.21537.005725.0931
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0004941
(v1.0)
Cnot718983
Minor ZGA0.9925
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004868
(v2.0)
Cnot718983
671/3650.3647557/3650.4924471/3653.92481069/3652.87323/365-1.8854134/365-2.0327
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004868
(v2.0)
Cnot718983
387/1620.74259/1620.5579456/1624.9931987/1623.91766/162-2.511356/162-2.1022
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004868
(v2.0)
Cnot718983
54.11411845.86
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004868
(v2.0)
Cnot718983
9.71597013.88
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004941
(v1.0)
Cnot7NM_01113518983
110.338118.55433.100722.043510.6097
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0004941
(v1.0)
Cnot7NM_01113518983
138.492135.40238.271526.764712.6851
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0004941
(v1.0)
Cnot7NM_01113518983
115.3693.91078129.345
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0004941
(v1.0)
Cnot7NM_01113518983
112.611117.364103.002
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0004941
(v1.0)
Cnot7NM_01113518983
137.519122.652
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0004941
(v1.0)
Cnot7NM_01113518983
115.4363.85722112.969
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0004941
(v1.0)
Cnot7NM_01113518983
30.646121.283818.738
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0004941
(v1.0)
Cnot7NM_01113518983
26.474922.9215
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0004941
(v1.0)
Cnot7NM_01113518983
81.31742.1204
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0004941
(v1.0)
Cnot7NM_01113518983
76.5405154.395
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0004941
(v1.0)
5297AF071431.1Mm.220129Cnot718983
U029751NAP109305-1Cnot7;TC929812,TC929807,TC929806,TC929805,TC929803,TC929802,TC929800,TC929799,TC929798,TC929797,TC929796,TC929794,TC929793,TC929792,TC929790,TC929786,TC929784,TC929783,TC929781,TC929778,TC929777,TC929775,TC929769,TC929763,TC929759,TC929756,TC929747,TC929741,TC9Q60809U,F,23.48043.14973.1473.12914.55093.7864.3446
0004941
(v1.0)
8133H3060D01-3Mm.206770Cnot718983
Cnot74.06654.03613.26652.98682.54612.74982.6346
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0004941
(v1.0)
1460665_a_atMm.272551Cnot7NM_011135.418983
568.851312.475646.8103.92552.4
0004941
(v1.0)
1423641_s_atMm.272551Cnot7NM_011135.418983
2664.0754135.5252810.55445.75257.975
0004941
(v1.0)
1430519_a_atMm.272551Cnot7NM_011135.418983
372.575383.075238.1127.3576.3
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0004941
(v1.0)
A_52_P120958Cnot7NM_01113518983
11P0.8210.315P
0004941
(v1.0)
A_52_P410732Cnot7NM_01113518983
11P0.7520.214P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0004941
(v1.0)
Cnot718983
041051