DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005049
GeneCopa
Synonymsxenin
Desc.coatomer protein complex subunit alpha
LocusNM_009938 chr1:174012660-174052463(+)
DB links


Entrez 12847
MGI 1334462
Ensembl ENSMUSG00000026553
Vega OTTMUSG00000033968
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Neuroactive ligand-receptor interaction (mmu04080)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004980
(v2.0)
CopaNM_00993812847
77.53489.8951824.39637.921658.0342641.620742.334935.809611.36336.9456
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005049
(v1.0)
Copa12847
1-Cell Transient0.99668
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004980
(v2.0)
Copa12847
559/3790.0477417/3790.0216209/3792.7038398/3791.395911/379-2.939174/379-2.9305
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004980
(v2.0)
Copa12847
234/1420.2064176/1420.1922201/1423.9912382/1422.73747/142-2.133724/142-3.0859
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004980
(v2.0)
Copa12847
70.822512855.33
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004980
(v2.0)
Copa12847
23.41627929.64
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005049
(v1.0)
CopaNM_00993812847
10.286816.85525.894525.549529.4762
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005049
(v1.0)
CopaNM_00993812847
169.645196.566104.44584.8478563.109
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005049
(v1.0)
CopaNM_00993812847
10.755828.355318.3894
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005049
(v1.0)
CopaNM_00993812847
10.498716.68626.4786
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005049
(v1.0)
CopaNM_00993812847
569.633987.115
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005049
(v1.0)
CopaNM_00993812847
10.76227.966929.0408
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005049
(v1.0)
CopaNM_00993812847
5.457415.358277.87184
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005049
(v1.0)
CopaNM_00993812847
100.884165.083
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005049
(v1.0)
CopaNM_00993812847
30.073316.914
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005049
(v1.0)
CopaNM_00993812847
8.4440215.9752
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005049
(v1.0)
18365L0204A02-3Mm.30041Copa12847
U001100NAP092606-001TC806564,TC798902Q99JW9U,F4.20984.35644.68354.45634.28184.43674.3042
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005049
(v1.0)
1415706_atMm.30041CopaNM_009938.412847
759.275981.1388.2329.325586.875
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005049
(v1.0)
A_51_P109335CopaNM_00993812847
11P0.9630.768P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005049
(v1.0)
Copa12847
182811244921