DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005057
GeneCops4
SynonymsCOP9 complex S4
D5Ertd774e
Desc.COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)
LocusNM_012001 chr5:100947328-100976821(+)
DB links


Entrez 26891
MGI 1349414
Ensembl ENSMUSG00000035297
Vega OTTMUSG00000026140
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2004989
(v2.0)
Cops4NM_01200126891
36.1946157.726114.06183.7941122.35555.202565.4885135.03111.74567.5914
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005057
(v1.0)
Cops426891
Maternal RNA0.9629
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004989
(v2.0)
Cops426891
663/4240.1318437/424-0.0725198/4242.4691439/4241.3762151/4240.5637893/4240.4743
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2004989
(v2.0)
Cops426891
316/1840.2661200/1840.0041190/1843.5628403/1842.446357/1840.3599268/184-0.0565
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004989
(v2.0)
Cops426891
67.440313151.48
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2004989
(v2.0)
Cops426891
15.17697520.24
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005057
(v1.0)
Cops4NM_01200126891
163.88278.825862.370784.812146.4144
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005057
(v1.0)
Cops4NM_01200126891
584.921262.078225.716299.369173.265
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005057
(v1.0)
Cops4NM_01200126891
171.35413.236786.0007
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005057
(v1.0)
Cops4NM_01200126891
167.25878.034399.9978
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005057
(v1.0)
Cops4NM_01200126891
338.614474.295
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005057
(v1.0)
Cops4NM_01200126891
171.45313.0554109.674
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005057
(v1.0)
Cops4NM_01200126891
57.745581.889577.008
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005057
(v1.0)
Cops4NM_01200126891
314.697278.455
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005057
(v1.0)
Cops4NM_01200126891
130.17145.1544
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005057
(v1.0)
Cops4NM_01200126891
16.73489.53992
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005057
(v1.0)
1500C0219F09-3Mm.957Cops426891
U005861NAP097329-001Cops4;TC836236O88544U,F,23.50073.81563.98233.97593.59323.82943.6729
0005057
(v1.0)
11433H3115D07-3Cops426891
U005861NAP097329-001Cops4;TC836236O88544U,F,22.80653.14843.09933.14892.69693.00242.737
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005057
(v1.0)
1416163_atMm.957Cops4NM_012001.226891
885.35280.175419.95313.45268.3
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005057
(v1.0)
A_51_P371119Cops4NM_01200126891
11P0.6860.165P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005057
(v1.0)
Cops426891
172210315715