DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0005057

Gene

Cops4

Synonyms

COP9 complex S4
D5Ertd774e

Description

COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)

Locus

NM_012001 UCSC: chr5:100947328-100976821(+) OLP: chr5:100947328-100976821(+)

DB links

Entrez 26891
MGI 1349414
Ensembl ENSMUSG00000035297
Vega OTTMUSG00000026140

Feature

protein-coding

GO_BP

1 Terms

GO_MF

1 Terms

GO_CC

3 Terms

KEGG

see DBTMEE:2004989 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0005057 (v1.0)	Cops4	NM_012001	26891	163.882	78.8258	62.3707	84.8121	46.4144

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0005057 (v1.0)	Cops4	NM_012001	26891	171.354	13.2367	86.0007

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0005057 (v1.0)	Cops4	NM_012001	26891	167.258	78.0343	99.9978

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0005057 (v1.0)	Cops4	NM_012001	26891	171.453	13.0554	109.674

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0005057 (v1.0)	Cops4	NM_012001	26891	57.7455	81.8895	77.008

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0005057 (v1.0)	Cops4	NM_012001	26891	130.171	45.1544

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0005057 (v1.0)	Cops4	NM_012001	26891	16.7348	9.53992

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0005057 (v1.0)	1500	C0219F09-3	Mm.957	Cops4	26891	U005861	NAP097329-001	Cops4;	TC836236	O88544	U,F,2	3.5007	3.8156	3.9823	3.9759	3.5932	3.8294	3.6729
0005057 (v1.0)	11433	H3115D07-3		Cops4	26891	U005861	NAP097329-001	Cops4;	TC836236	O88544	U,F,2	2.8065	3.1484	3.0993	3.1489	2.6969	3.0024	2.737

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0005057 (v1.0)	1416163_at	Mm.957	Cops4	NM_012001.2	26891	885.35	280.175	419.95	313.45	268.3

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0005057 (v1.0)	A_51_P371119	Cops4	NM_012001	26891	1	1	P	0.686	0.165	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0005057 (v1.0)	Cops4	26891	17	22	10	31	57	15