DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005840
GeneDdx39
SynonymsBAT1
Desc.DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
LocusNM_197982 chr8:86239076-86247250(+)
DB links


Entrez 68278
MGI 1915528
Ensembl ENSMUSG00000005481
Vega OTTMUSG00000026023
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005765
(v2.0)
Ddx39NM_19798268278
23.215535.514342.4211136.325166.447187.41444.238335.2168159.576201.414
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005840
(v1.0)
Ddx3968278
Major ZGA0.99793
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005765
(v2.0)
Ddx3968278
667/4460.0677421/446-0.1989174/4462.2127457/4461.361534/446-1.6272339/446-0.9919
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005765
(v2.0)
Ddx3968278
320/2000.1645189/200-0.1968156/2003.1669403/2002.32768/200-2.4459109/200-1.4623
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005765
(v2.0)
Ddx3968278
52.30113040.23
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005765
(v2.0)
Ddx3968278
12.40288614.42
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005840
(v1.0)
Ddx39NM_19798268278
36.911129.4222101.555115.59731.8172
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005840
(v1.0)
Ddx39NM_19798268278
38.59398.4901432.1002
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005840
(v1.0)
Ddx39NM_19798268278
37.671529.126826.1976
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005840
(v1.0)
Ddx39NM_19798268278
78.127369.1225
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005840
(v1.0)
Ddx39NM_19798268278
38.61638.3738628.7327
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005840
(v1.0)
Ddx39NM_19798268278
94.0239111.613110.378
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005840
(v1.0)
Ddx39NM_19798268278
217.912184.366
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005840
(v1.0)
Ddx39NM_19798268278
6.3805569.4701
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005840
(v1.0)
Ddx39NM_19798268278
111.91770.2818
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005840
(v1.0)
6554H3028A12-3Mm.282222610307C23Rik68278
U009559NAP108381-12610307C23Rik;Ddxl;TC903347,TC903346,TC799610,TC799609U,F,24.23474.26074.44434.7924.23384.57634.4101
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005840
(v1.0)
1451065_a_atMm.28222Ddx39NM_197982.368278
419.525622.51161.0251113.325744.7
0005840
(v1.0)
1455814_x_atMm.28222Ddx39NM_197982.368278
829.151472.3252184.0752217.752013.625
0005840
(v1.0)
1438168_x_atMm.28222Ddx39NM_197982.368278
964.3751415.52513.97524612328.4
0005840
(v1.0)
1438287_x_atMm.28222Ddx39NM_197982.368278
194.95250.225153.9052.425
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005840
(v1.0)
A_51_P288162Ddx39NM_19798268278
11P1.1020.507P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005840
(v1.0)
Ddx3968278
111211