DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0006126
GeneDnaja3
SynonymsTid-1
Desc.DnaJ (Hsp40) homolog, subfamily A, member 3
LocusNM_001135112 chr16:4684070-4707693(+)
NM_023646 chr16:4684070-4707693(+)
DB links


Entrez 83945
MGI 1933786
Ensembl ENSMUSG00000004069
Vega OTTMUSG00000024742
Featureprotein-coding
GO(BP)
  •   28 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      mitochondrial DNA replication (GO:0006264)
      protein folding (GO:0006457)
      negative regulation of protein kinase activity (GO:0006469)
      apoptotic process (GO:0006915)
      activation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0006919)
      activation-induced cell death of T cells (GO:0006924)
      mitochondrion organization (GO:0007005)
      small GTPase mediated signal transduction (GO:0007264)
      neuromuscular junction development (GO:0007528)
      cell aging (GO:0007569)
      cell death (GO:0008219)
      negative regulation of cell proliferation (GO:0008285)
      response to heat (GO:0009408)
      embryo development (GO:0009790)
      positive regulation of protein ubiquitination (GO:0031398)
      negative regulation of NF-kappaB transcription factor activity (GO:0032088)
      T cell differentiation in thymus (GO:0033077)
      response to interferon-gamma (GO:0034341)
      positive regulation of T cell proliferation (GO:0042102)
      positive regulation of apoptotic process (GO:0043065)
      negative regulation of apoptotic process (GO:0043066)
      negative regulation of I-kappaB kinase/NF-kappaB cascade (GO:0043124)
      negative regulation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0043154)
      regulation of catalytic activity (GO:0050790)
      protein stabilization (GO:0050821)
      negative regulation of interferon-gamma-mediated signaling pathway (GO:0060336)
      skeletal muscle acetylcholine-gated channel clustering (GO:0071340)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2006055
(v2.0)
Dnaja3NM_001135112,NM_02364683945
17.747725.952529.118613.819413.941615.92236.2567735.442212.733916.0065
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0006126
(v1.0)
Dnaja383945
Minor ZGA0.97045
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2006055
(v2.0)
Dnaja383945
616/441-0.0306417/441-0.1965290/4412.9621774/4412.136521/441-2.281226/441-1.5574
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2006055
(v2.0)
Dnaja383945
310/219-0.0114222/219-0.0961179/2193.2403489/2192.47675/219-3.159246/219-2.8104
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2006055
(v2.0)
Dnaja383945
31.794910330.87
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2006055
(v2.0)
Dnaja383945
11.91115920.19
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0006126
(v1.0)
Dnaja3NM_001135112,NM_02364683945
26.978920.210610.29319.646294.44689
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0006126
(v1.0)
Dnaja3NM_001135112,NM_02364683945
38.728222.735211.934111.5325.35165
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0006126
(v1.0)
Dnaja3NM_001135112,NM_02364683945
28.20896.4908122.0502
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0006126
(v1.0)
Dnaja3NM_001135112,NM_02364683945
27.534720.007726.2404
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0006126
(v1.0)
Dnaja3NM_001135112,NM_02364683945
23.084730.7688
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0006126
(v1.0)
Dnaja3NM_001135112,NM_02364683945
28.22536.401928.7795
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0006126
(v1.0)
Dnaja3NM_001135112,NM_02364683945
9.529819.313888.8179
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0006126
(v1.0)
Dnaja3NM_001135112,NM_02364683945
11.407710.7373
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0006126
(v1.0)
Dnaja3NM_001135112,NM_02364683945
6.256066.32551
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0006126
(v1.0)
Dnaja3NM_001135112,NM_02364683945
6.929976.01369
NIA60mer N/A
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0006126
(v1.0)
A_52_P268387Dnaja3NM_02364683945
11P0.6580.149P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0006126
(v1.0)
Dnaja383945
54.67211122.67