DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0006188
GeneDnmt3a
Synonyms
Desc.DNA methyltransferase 3A
LocusNM_007872 chr12:3806980-3914443(+)
NM_001271753 chr12:3807160-3914443(+)
NM_153743 chr12:3891744-3914443(+)
DB links


Entrez 13435
MGI 1261827
Ensembl ENSMUSG00000020661
Vega OTTMUSG00000037610
Featureprotein-coding
GO(BP)
  •   18 Terms
GO(MF)
GO(CC)
KEGG
  •   2 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2006117
(v2.0)
Dnmt3aNM_001271753,NM_007872,NM_15374313435
33.171937.33561.408910.877311.67529.798174.0284769.633812.311319.3497
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0006188
(v1.0)
Dnmt3a13435
Minor ZGA0.99026
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2006117
(v2.0)
Dnmt3a13435
879/5380.1951476/538-0.2922146/5381.6971344/5380.6835155/5380.26061214/5380.5739
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2006117
(v2.0)
Dnmt3a13435
454/1800.8184217/1800.1527132/1803.0704299/1802.048288/1801.0087615/1801.1688
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2006117
(v2.0)
Dnmt3a13435
63.055712152.11
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2006117
(v2.0)
Dnmt3a13435
9.19526314.6
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0006188
(v1.0)
Dnmt3aNM_007872,NM_15374313435
42.382950.0377.678698.069482.79211
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0006188
(v1.0)
Dnmt3aFR232498,NM_007872,NM_15374313435
6520.25266.851023.031022.68122.429
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0006188
(v1.0)
Dnmt3aNM_007872,NM_15374313435
44.315212.669654.5915
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0006188
(v1.0)
Dnmt3aNM_007872,NM_15374313435
43.256149.534666.0893
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0006188
(v1.0)
Dnmt3aFR232498,NM_007872,NM_15374313435
809.0121145.88
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0006188
(v1.0)
Dnmt3aNM_007872,NM_15374313435
44.34112.49672.4845
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0006188
(v1.0)
Dnmt3aNM_007872,NM_15374313435
7.109277.791418.42812
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0006188
(v1.0)
Dnmt3aFR232498,NM_007872,NM_15374313435
1023.051692.21
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0006188
(v1.0)
Dnmt3aNM_007872,NM_15374313435
49.12488.17217
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0006188
(v1.0)
Dnmt3aNM_007872,NM_15374313435
13.193217.1533
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0006188
(v1.0)
1422C0207G10-3Mm.229338U013709NAP041210-1Dnmt3a;O88508U,F,22.19342.4922.47982.42932.0392.36392.1805
0006188
(v1.0)
9810H3086G02-3Dnmt3a13435
U013709NAP092564-001Dnmt3a;TC892740O88508U,F,23.10112.95222.9933.01233.32683.12443.2072
0006188
(v1.0)
11794H3123C02-3Mm.5001Dnmt3a13435
U013709NAP092564-001Dnmt3a;TC909399O88508U,F,22.65942.62952.40912.47992.16932.2342.2775
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0006188
(v1.0)
1423063_atMm.5001Dnmt3aNM_007872.4,NM_153743.313435
77.7123.97581.0581.590.325
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0006188
(v1.0)
A_52_P30497Dnmt3aNM_00787213435
11P1.0910.558P
0006188
(v1.0)
A_52_P76146Dnmt3aNM_00787213435
11P0.8740.406P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0006188
(v1.0)
Dnmt3a13435
130130