DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0007626
GeneFoxd3
SynonymsCWH3
Genesis
Hfh2
Desc.forkhead box D3
LocusNM_010425 chr4:99322990-99325362(+)
DB links


Entrez 15221
MGI 1347473
Ensembl ENSMUSG00000067261
Vega OTTMUSG00000007976
Featureprotein-coding
GO(BP)
  •   21 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      branching involved in ureteric bud morphogenesis (GO:0001658)
      in utero embryonic development (GO:0001701)
      neural crest cell migration (GO:0001755)
      kidney development (GO:0001822)
      trophectodermal cell differentiation (GO:0001829)
      embryonic placenta development (GO:0001892)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      multicellular organismal development (GO:0007275)
      pattern specification process (GO:0007389)
      peripheral nervous system development (GO:0007422)
      melanocyte differentiation (GO:0030318)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      enteric nervous system development (GO:0048484)
      sympathetic nervous system development (GO:0048485)
      axon extension involved in axon guidance (GO:0048846)
      lateral line nerve glial cell development (GO:0048937)
      iridophore differentiation (GO:0050935)
      regulation of sequence-specific DNA binding transcription factor activity (GO:0051090)
      cartilage development (GO:0051216)
GO(MF)
  •   10 Terms
      RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977)
      RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription (GO:0001227)
      DNA binding (GO:0003677)
      double-stranded DNA binding (GO:0003690)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity (GO:0003705)
      transcription factor binding (GO:0008134)
      DNA binding, bending (GO:0008301)
      sequence-specific DNA binding (GO:0043565)
      transcription regulatory region DNA binding (GO:0044212)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2007553
(v2.0)
Foxd3NM_01042515221
0.0919075000.1711603.94237000.05982396.29086
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0007626
(v1.0)
Foxd315221
2-Cell Transient0.96908
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007553
(v2.0)
Foxd315221
1173/3811.1075820/3810.9878110/3811.7766880/3812.53111080/3813.54663785/3812.7099
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007553
(v2.0)
Foxd315221
605/1391.6021324/1391.099268/1392.4699430/1392.938300/1393.12991375/1392.6982
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007553
(v2.0)
Foxd315221
19.713685.36
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007553
(v2.0)
Foxd315221
8.64171705.08
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007626
(v1.0)
Foxd3NM_01042515221
000.12637600
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007626
(v1.0)
Foxd3NM_01042515221
000.12362500
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0007626
(v1.0)
Foxd3NM_01042515221
00.03361150
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0007626
(v1.0)
Foxd3NM_01042515221
00.03315110
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0007626
(v1.0)
Foxd3NM_01042515221
0.11700400.0418559
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0007626
(v1.0)
Foxd3NM_01042515221
00.0490711
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0007626
(v1.0)
Foxd3NM_01042515221
00.03249
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0007626
(v1.0)
A_51_P286423Foxd3NM_01042515221
11P0.4260.0741P
Proteome N/A