DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0007962
GeneGdpd1
SynonymsPak1ip1
p21-activated protein kinase-interacting protein 1
PIP1
Desc.PAK1 interacting protein 1
LocusNM_025638 chr11:86847296-86887639(-)
DB links


Entrez 66569
MGI 1913819
Ensembl ENSMUSG00000061666
Vega OTTMUSG00000001223
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2007893
(v2.0)
Gdpd1NM_02563866569
11.5852158.07862.199710.29028.288293.860267.876548.345213.8974.53237
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0007962
(v1.0)
Gdpd166569
Maternal RNA0.89224
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007893
(v2.0)
Gdpd166569
763/4100.3824581/4100.3859849/4104.61082087/4103.6709102/4100.0502649/4100.0631
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007893
(v2.0)
Gdpd166569
429/1860.6899311/1860.6227816/1865.64491876/1864.64770/1860.6364422/1860.58
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007893
(v2.0)
Gdpd166569
50.791413437.9
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007893
(v2.0)
Gdpd166569
13.73869115.1
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007962
(v1.0)
Gdpd1NM_02563866569
164.32543.02617.65975.753235.67802
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007962
(v1.0)
Gdpd1FR038771,FR376345,NM_02563866569
1691.9627.13585.28643.100851.239
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0007962
(v1.0)
Gdpd1NM_02563866569
171.8174.2368446.9424
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0007962
(v1.0)
Gdpd1NM_02563866569
167.71142.594135.8467
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0007962
(v1.0)
Gdpd1FR038771,FR376345,NM_02563866569
636.779549.709
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0007962
(v1.0)
Gdpd1NM_02563866569
171.9174.1788139.3154
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0007962
(v1.0)
Gdpd1NM_02563866569
7.091695.554979.70941
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0007962
(v1.0)
Gdpd1FR376345,NM_02563866569
8.0281713.5282
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0007962
(v1.0)
Gdpd1NM_02563866569
128.49210.5102
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0007962
(v1.0)
Gdpd1NM_02563866569
51.5794152.081
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0007962
(v1.0)
8083H3059F02-3Mm.77752610020H15Rik66569
U033233NAP094189-0012610020H15Rik;TC893000Q9CRY7U,F3.61893.58143.32543.11583.08823.11383.0513
0007962
(v1.0)
21452L0854D12-3Mm.77752610020H15Rik66569
U033233NAP094189-0012610020H15Rik;TC893000Q9CRY7U,F4.19673.6953.34573.32343.54393.39013.3612
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0007962
(v1.0)
1424076_atMm.281887Gdpd1NM_025638.266569
1077.975553.67548.700
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0007962
(v1.0)
A_52_P236088Gdpd1NM_02563866569
11P0.6090.126P
0007962
(v1.0)
A_52_P75465Gdpd1NM_02563866569
11P1.1220.455P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0007962
(v1.0)
Gdpd166569
2217146416570