DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0009850
GeneH3f3a
SynonymsH3.3A
Desc.H3 histone, family 3A
LocusNM_008210 chr1:182732699-182743734(-)
DB links


Entrez 15078
MGI 1097686
Ensembl ENSMUSG00000060743
Vega OTTMUSG00000021525
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Systemic lupus erythematosus (mmu05322)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009729
(v2.0)
H3f3aNM_00821015078
137.603113.025133.689145.531232.86574.25988.8479105.854213.834704.36
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0009850
(v1.0)
H3f3a15078
MGA0.99904
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009729
(v2.0)
H3f3a15078
781/4100.416522/4100.2317679/4104.28892269/4103.791522/410-2.1127183/410-1.7548
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009729
(v2.0)
H3f3a15078
459/1341.2572276/1340.9212573/1345.57481680/1344.95359/134-1.730571/134-1.496
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009729
(v2.0)
H3f3a15078
61.416917036.13
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009729
(v2.0)
H3f3a15078
14.967912112.37
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009850
(v1.0)
H3f3aNM_00821015078
117.38891.6232108.306161.58262.6233
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009850
(v1.0)
H3f3aNM_00821015078
2.620892.232511.998494.063261.436
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0009850
(v1.0)
H3f3aNM_00821015078
122.7450.322999.9629
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0009850
(v1.0)
H3f3aNM_00821015078
119.80690.703278.189
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0009850
(v1.0)
H3f3aNM_00821015078
2.267242.34299
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0009850
(v1.0)
H3f3aNM_00821015078
122.81149.633785.755
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0009850
(v1.0)
H3f3aNM_00821015078
100.274156.014147.287
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0009850
(v1.0)
H3f3aNM_00821015078
4.019553.42996
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0009850
(v1.0)
H3f3aNM_00821015078
55.7004160.186
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0009850
(v1.0)
H3f3aNM_00821015078
1.797727.91529
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0009850
(v1.0)
17751L0013A01-3Mm.89136H3f3a15078
U022145NAP028194-1TC924255,TC924252,TC924251U,F,23.95974.11963.84764.59464.80774.68444.6666
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0009850
(v1.0)
1434127_a_atMm.315189H3f3aNM_008210.415078
4734.95353.7756083.1259366.754351.675
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0009850
(v1.0)
A_51_P456237H3f3aNM_00821015078
11P1.0780.591P
0009850
(v1.0)
A_52_P1041253H3f3aNM_00821015078
11P0.7640.238P
0009850
(v1.0)
A_52_P76734H3f3aNM_00821015078
11P0.7270.208P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0009850
(v1.0)
H3f3a15078
100200