DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010027
GeneHigd1a
SynonymsHig1
HIMP1
Desc.HIG1 domain family, member 1A
LocusNM_019814 chr9:121757678-121767118(-)
DB links


Entrez 56295
MGI 1930666
Ensembl ENSMUSG00000038412
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009908
(v2.0)
Higd1aNM_01981456295
39.348217.522215.68546.884185.3045945.85316.289418.93016.0566358.671
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010027
(v1.0)
Higd1a56295
Maternal RNA0.98506
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009908
(v2.0)
Higd1a56295
772/4180.3715558/4180.2999704/4184.31391705/4183.351773/418-0.4544359/418-0.8162
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009908
(v2.0)
Higd1a56295
434/2040.574303/2040.4526678/2045.25251532/2044.223321/204-1.1844116/204-1.4021
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009908
(v2.0)
Higd1a56295
42.500911836.02
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009908
(v2.0)
Higd1a56295
13.54458715.57
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010027
(v1.0)
Higd1aNM_01981456295
18.210810.845.136173.68294.52422
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010027
(v1.0)
Higd1aNM_01981456295
15.14838.638963.208721.454611.32406
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010027
(v1.0)
Higd1aNM_01981456295
19.04114.3911.8266
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010027
(v1.0)
Higd1aNM_01981456295
18.585910.731114.0238
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010027
(v1.0)
Higd1aNM_01981456295
8.7741610.6342
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010027
(v1.0)
Higd1aNM_01981456295
19.052114.192915.3808
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010027
(v1.0)
Higd1aNM_01981456295
4.755293.555994.20395
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010027
(v1.0)
Higd1aNM_01981456295
1.438931.5759
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010027
(v1.0)
Higd1aNM_01981456295
13.01177.37255
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010027
(v1.0)
Higd1aNM_01981456295
14.790710.4126
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010027
(v1.0)
1416480_a_atMm.391698~Mm.347915Gm9790~Higd1aNM_001112668.1~NM_019814.4100042265
56295
816.15198.125901.375405.45894.875
0010027
(v1.0)
1448359_a_atMm.347915Higd1aNM_019814.456295
59.77583.67527.300
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010027
(v1.0)
A_51_P263310MGI:1930666NM_01981456295
11P0.7910.403P
0010027
(v1.0)
A_52_P458697MGI:1930666NM_01981456295
11P0.6010.141P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0010027
(v1.0)
Higd1a56295
100100