DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010128
GeneHmg20a
SynonymsHmgxb1
Desc.high mobility group 20A
LocusNM_025812 chr9:56266653-56344743(+)
DB links


Entrez 66867
MGI 1914117
Ensembl ENSMUSG00000032329
Featureprotein-coding
GO(BP)
  •   5 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      chromatin modification (GO:0016568)
      negative regulation of neuron differentiation (GO:0045665)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010011
(v2.0)
Hmg20aNM_02581266867
9.9487349.400768.62918.994835.636629.1890512.472569.4317.837428.19538
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010128
(v1.0)
Hmg20a66867
Minor ZGA0.96697
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010011
(v2.0)
Hmg20a66867
661/4060.1899445/4060.0161168/4062.2941421/4061.378130/406-1.6681156/406-1.9689
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010011
(v2.0)
Hmg20a66867
330/1670.4674172/167-0.0732161/1673.456365/1672.44174/167-3.039548/167-2.3619
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010011
(v2.0)
Hmg20a66867
50.513415333.02
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010011
(v2.0)
Hmg20a66867
8.60171087.96
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010128
(v1.0)
Hmg20aNM_02581266867
51.346947.60136.702013.905658.69262
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010128
(v1.0)
Hmg20aFR132477,FR144102,FR318633,NM_02581266867
63.107152.88758.091215.2282912.0103
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010128
(v1.0)
Hmg20aNM_02581266867
53.68793.6383551.934
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010128
(v1.0)
Hmg20aNM_02581266867
52.404747.123351.4066
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010128
(v1.0)
Hmg20aFR132477,FR144102,FR318633,NM_02581266867
53.701660.8087
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010128
(v1.0)
Hmg20aNM_02581266867
53.71913.5885256.381
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010128
(v1.0)
Hmg20aNM_02581266867
6.205023.771065.42558
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010128
(v1.0)
Hmg20aFR132477,FR144102,FR318633,NM_02581266867
5.171847.04193
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010128
(v1.0)
Hmg20aNM_02581266867
41.14312.40086
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010128
(v1.0)
Hmg20aNM_02581266867
10.850810.4531
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010128
(v1.0)
11468H3116A12-3Mm.150856Hmg20a66867
U010525NAP095190-001Hmg20a;TC941649Q9CYG2U,F3.44533.40413.68623.44753.25763.41343.2509
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010128
(v1.0)
1416722_atMm.150856Hmg20aNM_025812.266867
570.55715.925218.075109.625178.575
0010128
(v1.0)
1428920_atMm.150856Hmg20aNM_025812.266867
23.750000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010128
(v1.0)
A_51_P468780Hmg20aNM_02581266867
11P0.610.127P
0010128
(v1.0)
A_52_P228389Hmg20aAK03922266867
11P0.6540.217P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0010128
(v1.0)
Hmg20a66867
010010