DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010130
GeneHmga1
SynonymsHMG-I(Y)
Hmga1a
Hmga1b
Hmgi
HMGI(Y)
Hmgiy
HMGY
Desc.high mobility group AT-hook 1
LocusNM_001166546 chr17:27693519-27700617(+)
NM_001166541 chr17:27693519-27700617(+)
NM_001166542 chr17:27693519-27700617(+)
NM_001166536 chr17:27693519-27700617(+)
NM_001166543 chr17:27693519-27700617(+)
NM_001166544 chr17:27693519-27700617(+)
NM_001166535 chr17:27693519-27700617(+)
NM_001166545 chr17:27693519-27700617(+)
NM_001166540 chr17:27693519-27700617(+)
NM_001166539 chr17:27693519-27700617(+)
NM_001039356 chr17:27693519-27700617(+)
NM_001025427 chr17:27693519-27700617(+)
NM_016660 chr17:27693549-27700617(+)
NM_001166537 chr17:27693549-27700617(+)
DB links


Entrez 15361
MGI 96160
Ensembl ENSMUSG00000046711
Vega OTTMUSG00000028935
Featureprotein-coding
GO(BP)
  •   8 Terms
      base-excision repair (GO:0006284)
      spermatogenesis (GO:0007283)
      negative regulation of cell proliferation (GO:0008285)
      senescence-associated heterochromatin focus assembly (GO:0035986)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      oncogene-induced senescence (GO:0090402)
      positive regulation of cellular senescence (GO:2000774)
GO(MF)
  •   10 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001077)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906)
      transcription factor binding (GO:0008134)
      enzyme binding (GO:0019899)
      ligand-dependent nuclear receptor transcription coactivator activity (GO:0030374)
      retinoic acid receptor binding (GO:0042974)
      peroxisome proliferator activated receptor binding (GO:0042975)
      retinoid X receptor binding (GO:0046965)
      5'-deoxyribose-5-phosphate lyase activity (GO:0051575)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010013
(v2.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
111.05468.525784.37488.458518.53562616.222147.605127.57910.9543757.474
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010130
(v1.0)
Hmga115361
Maternal RNA0.96619
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010013
(v2.0)
Hmga115361
1006/4650.5995440/465-0.1955162/4652.0515449/4651.276233/465-1.7287283/465-1.3112
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010013
(v2.0)
Hmga115361
602/1611.3844239/1610.4513141/1613.3151382/1612.55929/161-1.98899/161-1.2879
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010013
(v2.0)
Hmga115361
89.492325335.37
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010013
(v2.0)
Hmga115361
11.22641626.93
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010130
(v1.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
71.277158.56126.288355.94412105.516
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010130
(v1.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
2.25911.808640.4436380.3170849.63077
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010130
(v1.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
74.526740.613863.8916
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010130
(v1.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
72.745557.973294.6007
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010130
(v1.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
1.836573.70031
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010130
(v1.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
74.5740.0575103.755
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010130
(v1.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
5.822035.739297.64341
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010130
(v1.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
0.2269670.198635
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010130
(v1.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
39.76395.2663
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010130
(v1.0)
Hmga1NM_001025427,NM_001039356,NM_001166535,NM_001166536,NM_001166537,NM_001166539,NM_001166540,NM_001166541,NM_001166542,NM_001166543,NM_001166544,NM_001166545,NM_001166546,NM_01666015361
30.503137.5859
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010130
(v1.0)
6605H3029B11-3Mm.4438Hmga115361
U017728NAP120086-1Hmga1;TC920000,TC919997,TC799437P17095U,F3.26943.33723.4773.41783.18073.34823.1933
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010130
(v1.0)
1416184_s_atMm.426212~Mm.4438Hmga1-rs1~Hmga1NM_001166476.1,NM_001166477.1~NM_016660.3,NM_001166537.1,NM_001039356.2,NM_001166539.1,NM_001166535.1,NM_001166543.1,NM_001166545.1,NM_001166540.1,NM_001025427.3,NM_001166536.1,NM_001166544.1,NM_001166546.1,NM_001166541.1,NM_001166542.1111241
15361
349.425252.05127.65103.9125.225
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010130
(v1.0)
A_51_P483118Hmga1NM_01666015361
11P1.4020.183P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0010130
(v1.0)
Hmga115361
100400