DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010239
GeneHpcal1
Synonymsneural visinin-like 3
Nvp3
VILIP3
visinin like 3
Vnsl3
Desc.hippocalcin-like 1
LocusNM_016677 chr12:17697620-17798732(+)
DB links


Entrez 53602
MGI 1855689
Ensembl ENSMUSG00000071379
Featureprotein-coding
GO(BP)
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010126
(v2.0)
Hpcal1NM_01667753602
51.76365.925388.089823.50094.521519.233114.612688.96356.7022222.9473
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010239
(v1.0)
Hpcal153602
Minor ZGA0.95918
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010126
(v2.0)
Hpcal153602
885/4990.3133534/499-0.0184760/4994.17531848/4993.2137370/4991.61821824/4991.269
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010126
(v2.0)
Hpcal153602
507/1940.8697279/1940.4062551/1945.02211239/1943.9889248/1942.38721130/1941.9374
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010126
(v2.0)
Hpcal153602
41.902613830.36
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010126
(v2.0)
Hpcal153602
8.47011018.39
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010239
(v1.0)
Hpcal1NM_01667753602
68.543261.042317.48013.1327510.3725
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010239
(v1.0)
Hpcal1NM_01667753602
72.017155.214116.37092.731910.379
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010239
(v1.0)
Hpcal1NM_01667753602
71.668218.930366.5984
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010239
(v1.0)
Hpcal1NM_01667753602
69.955360.429366.044
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010239
(v1.0)
Hpcal1NM_01667753602
56.064462.8133
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010239
(v1.0)
Hpcal1NM_01667753602
71.709918.67172.4348
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010239
(v1.0)
Hpcal1NM_01667753602
16.18383.02484.60892
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010239
(v1.0)
Hpcal1NM_01667753602
2.702454.70618
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010239
(v1.0)
Hpcal1NM_01667753602
16.79091.59928
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010239
(v1.0)
Hpcal1NM_01667753602
17.26258.62862
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010239
(v1.0)
1448812_atMm.485800Hpcal1NM_016677.453602
710.775740.775553.500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010239
(v1.0)
A_51_P487360Hpcal1NM_01667753602
11P0.5530.124P
0010239
(v1.0)
A_52_P536735Hpcal1NM_01667753602
11P0.8140.318P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0010239
(v1.0)
Hpcal153602
1221102