DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0010803

Gene

Itga6

Synonyms

Cd49f

Description

integrin alpha 6

Locus

NM_008397 UCSC: chr2:71625140-71694815(+) OLP: chr2:71625140-71694815(+)

DB links

Entrez 16403
MGI 96605
Ensembl ENSMUSG00000027111
Vega OTTMUSG00000013266

Feature

protein-coding

GO_BP

16 Terms

GO_MF

4 Terms

GO_CC

14 Terms

KEGG

11 Terms

see DBTMEE:2010702 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0010803 (v1.0)	Itga6	NM_008397	16403	153.656	109.981	44.2479	15.5288	6.17028

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0010803 (v1.0)	Itga6	NM_008397	16403	160.662	9.79687	119.992

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0010803 (v1.0)	Itga6	NM_008397	16403	156.822	108.877	94.6753

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0010803 (v1.0)	Itga6	NM_008397	16403	160.755	9.66269	103.837

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0010803 (v1.0)	Itga6	NM_008397	16403	40.9667	14.9937	16.6101

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0010803 (v1.0)	Itga6	NM_008397	16403	151.218	16.4246

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0010803 (v1.0)	Itga6	NM_008397	16403	11.5096	24.281

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0010803 (v1.0)	5233	X69902.1	Mm.225096	Itga6	16403	U001906	NAP000327-002	Itga6;	TC919061,TC919057,TC816179	Q61739	U,F,2	2.5816	2.4699	2.4358	2.5255	2.0713	2.0575	2.1594
0010803 (v1.0)	19496	L0276A02-3	Mm.25232			U001906	NAP117246-1	Itga6;	TC919059,TC919057	Q61739	U,F,2	4.0856	3.8754	3.3396	3.3508	3.5592	3.4743	3.5837

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0010803 (v1.0)	1422444_at	Mm.225096	Itga6	NM_008397.3	16403	459.75	1137.55	266	57.4	202

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0010803 (v1.0)	A_51_P262401	Itga6	BC024571	16403	1	1	P	0.642	0.141	P
0010803 (v1.0)	A_52_P81270	Itga6	NM_008397	16403	1	1	P	0.279	0.0793	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0010803 (v1.0)	Itga6	16403	4.4	1	1.6	5.2	1	2.4