DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010803
GeneItga6
SynonymsCd49f
Desc.integrin alpha 6
LocusNM_008397 chr2:71625140-71694815(+)
DB links


Entrez 16403
MGI 96605
Ensembl ENSMUSG00000027111
Vega OTTMUSG00000013266
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010702
(v2.0)
Itga6NM_001277970,NM_00839716403
22.6991128.833127.44148.194619.02122.13987.43561101.6619.579614.4455
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010803
(v1.0)
Itga616403
Maternal RNA0.95916
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010702
(v2.0)
Itga616403
733/4510.1875438/451-0.158115/4511.6038322/4510.8417220/4511.01541298/4510.9242
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010702
(v2.0)
Itga616403
390/1670.7075207/1670.1925106/1672.8576274/1672.0293113/1671.4714648/1671.3516
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010702
(v2.0)
Itga616403
74.112715547.81
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010702
(v2.0)
Itga616403
14.29059315.37
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010803
(v1.0)
Itga6NM_00839716403
153.656109.98144.247915.52886.17028
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010803
(v1.0)
Itga6NM_00839716403
3143.471748.07685.063355.602115.828
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010803
(v1.0)
Itga6NM_00839716403
160.6629.79687119.992
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010803
(v1.0)
Itga6NM_00839716403
156.822108.87794.6753
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010803
(v1.0)
Itga6NM_00839716403
1677.141434.6
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010803
(v1.0)
Itga6NM_00839716403
160.7559.66269103.837
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010803
(v1.0)
Itga6NM_00839716403
40.966714.993716.6101
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010803
(v1.0)
Itga6NM_00839716403
376.038379.44
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010803
(v1.0)
Itga6NM_00839716403
151.21816.4246
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010803
(v1.0)
Itga6NM_00839716403
11.509624.281
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010803
(v1.0)
5233X69902.1Mm.225096Itga616403
U001906NAP000327-002Itga6;TC919061,TC919057,TC816179Q61739U,F,22.58162.46992.43582.52552.07132.05752.1594
0010803
(v1.0)
19496L0276A02-3Mm.25232U001906NAP117246-1Itga6;TC919059,TC919057Q61739U,F,24.08563.87543.33963.35083.55923.47433.5837
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010803
(v1.0)
1422444_atMm.225096Itga6NM_008397.316403
459.751137.5526657.4202
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010803
(v1.0)
A_51_P262401Itga6BC02457116403
11P0.6420.141P
0010803
(v1.0)
A_52_P81270Itga6NM_00839716403
11P0.2790.0793P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0010803
(v1.0)
Itga616403
4.411.65.212.4