DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011054
GeneKdm2a
SynonymsCxxc8
Fbl7
Fbxl11
Gm4560
Jhdm1a
lalina
Desc.lysine (K)-specific demethylase 2A
LocusNM_001001984 chr19:4316147-4397077(-)
DB links


Entrez 225876
MGI 1354736
Ensembl ENSMUSG00000054611
Vega OTTMUSG00000039985
Featureprotein-coding
GO(BP)
GO(MF)
  •   7 Terms
      DNA binding (GO:0003677)
      zinc ion binding (GO:0008270)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
      unmethylated CpG binding (GO:0045322)
      metal ion binding (GO:0046872)
      histone demethylase activity (H3-K36 specific) (GO:0051864)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010961
(v2.0)
Kdm2aNM_001001984225876
12.44199.2417116.350122.34839.252667.822326.235515.88817.668017.57763
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011054
(v1.0)
Kdm2a225876
Major ZGA0.99993
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010961
(v2.0)
Kdm2a225876
858/3390.825519/3390.497374/3393.69591024/3392.916933/339-1.2775306/339-0.7442
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010961
(v2.0)
Kdm2a225876
551/1641.2305278/1640.642366/1644.6602933/1643.8194/164-3.014121/164-1.0289
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010961
(v2.0)
Kdm2a225876
24.627311920.7
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010961
(v2.0)
Kdm2a225876
5.3388975.5
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011054
(v1.0)
Kdm2aNM_001001984225876
9.6095411.3516.62826.4133218.3003
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011054
(v1.0)
Kdm2aNM_001001984225876
58.601689.5416155.02169.646990.2404
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011054
(v1.0)
Kdm2aNM_001001984225876
10.04774.5501312.3831
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011054
(v1.0)
Kdm2aNM_001001984225876
9.8075111.236111.7593
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011054
(v1.0)
Kdm2aNM_001001984225876
266.675148.062
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011054
(v1.0)
Kdm2aNM_001001984225876
10.05354.4878112.8972
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011054
(v1.0)
Kdm2aNM_001001984225876
15.39516.192325.29543
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011054
(v1.0)
Kdm2aNM_001001984225876
75.87853.9212
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011054
(v1.0)
Kdm2aNM_001001984225876
9.26239.34745
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011054
(v1.0)
Kdm2aNM_001001984225876
4.091632.17236
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011054
(v1.0)
1438890_atMm.31941Kdm2aNM_001001984.2225876
156.1750170149.425168.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011054
(v1.0)
A_52_P92557Fbxl11NM_001001984225876
11P1.0380.778P
Proteome N/A