DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011066
GeneKdm6a
SynonymsUtx
Desc.lysine (K)-specific demethylase 6A
LocusNM_009483 chrX:17739793-17856484(+)
DB links


Entrez 22289
MGI 1095419
Ensembl ENSMUSG00000037369
Vega OTTMUSG00000016960
Featureprotein-coding
GO(BP)
GO(MF)
  •   3 Terms
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
      metal ion binding (GO:0046872)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010973
(v2.0)
Kdm6aNM_00948322289
3.5660382.4269138.61644.291842.4996.282711.8456127.83948.90246.37568
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011066
(v1.0)
Kdm6a22289
Minor ZGA0.99792
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010973
(v2.0)
Kdm6a22289
467/1680.958281/1680.6229527/1685.15251372/1684.340626/168-0.615127/168-0.9944
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010973
(v2.0)
Kdm6a22289
355/991.3208162/990.5894525/995.84381290/9957/99-1.63139/99-1.9028
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010973
(v2.0)
Kdm6a22289
23.606212019.67
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010973
(v2.0)
Kdm6a22289
6.5397966.81
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011066
(v1.0)
Kdm6aNM_00948322289
85.658895.362932.977429.43678.27691
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011066
(v1.0)
Kdm6aNM_00948322289
1052.21120.8354.788412.67385.7902
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011066
(v1.0)
Kdm6aNM_00948322289
89.56411.30413104.043
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011066
(v1.0)
Kdm6aNM_00948322289
87.423594.405494.5315
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011066
(v1.0)
Kdm6aNM_00948322289
1335.14597.255
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011066
(v1.0)
Kdm6aNM_00948322289
89.61621.28627103.679
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011066
(v1.0)
Kdm6aNM_00948322289
30.53228.422333.6983
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011066
(v1.0)
Kdm6aNM_00948322289
248.447243.665
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011066
(v1.0)
Kdm6aNM_00948322289
50.844466.6684
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011066
(v1.0)
Kdm6aNM_00948322289
9.7408921.2353
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011066
(v1.0)
12958H3155G02-3Mm.28750Utx22289
TC847974,TC847969,TC847968U,F,23.58473.48922.98073.07792.89563.09413.0483
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011066
(v1.0)
1427235_atMm.257498Kdm6aNM_009483.122289
362.825641.55368.55117.92588.875
0011066
(v1.0)
1427672_a_atMm.257498Kdm6aNM_009483.122289
762.51856.825737.60144.55
0011066
(v1.0)
1445198_atMm.257498Kdm6aNM_009483.122289
00078.587.2
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011066
(v1.0)
A_52_P551707UtxNM_00948322289
11P1.2110.317P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011066
(v1.0)
Utx22289
010010