DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011137
GeneKit
Synonymsbelly-spot
c-KIT
CD117
Dominant white spotting
Gsfsco1
Gsfsco5
Gsfsow3
SCO1
SCO5
SOW3
Steel Factor Receptor
Tr-kit
Desc.kit oncogene
LocusNM_001122733 chr5:75971012-76052746(+)
NM_021099 chr5:75971016-76052746(+)
DB links


Entrez 16590
MGI 96677
Ensembl ENSMUSG00000005672
Vega OTTMUSG00000016671
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011046
(v2.0)
KitNM_001122733,NM_02109916590
4.12021124.437116.92748.20416.167423.37740.0073117390.030719.735312.0578
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011137
(v1.0)
Kit16590
Maternal RNA0.96242
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011046
(v2.0)
Kit16590
801/4450.3345494/4450.034447/4450.3496334/4450.9135283/4451.39642058/4451.6078
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011046
(v2.0)
Kit16590
456/1531.0578247/1530.571741/1531.6259294/1532.2549181/1532.26951042/1532.1611
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011046
(v2.0)
Kit16590
80.665919740.95
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011046
(v2.0)
Kit16590
19.345111916.26
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011137
(v1.0)
KitNM_001122733,NM_02109916590
129.36280.787135.869611.19030.00561083
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011137
(v1.0)
KitNM_001122733,NM_02109916590
1100.05946.117374.45114.5390.0223437
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011137
(v1.0)
KitNM_001122733,NM_02109916590
135.261.5068288.1404
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011137
(v1.0)
KitNM_001122733,NM_02109916590
132.02779.975966.7102
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011137
(v1.0)
KitNM_001122733,NM_02109916590
568.04396.945
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011137
(v1.0)
KitNM_001122733,NM_02109916590
135.3381.4861873.1655
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011137
(v1.0)
KitNM_001122733,NM_02109916590
33.209710.804713.711
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011137
(v1.0)
KitNM_001122733,NM_02109916590
51.6173158.628
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011137
(v1.0)
KitNM_001122733,NM_02109916590
82.20418.5353
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011137
(v1.0)
KitNM_001122733,NM_02109916590
19.937622.534
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011137
(v1.0)
18796L0227G09-3Mm.4394Kit16590
U005697NAP004133-001Kit;TC925134,TC925133P05532U,F,23.48383.10012.59692.55252.67612.54072.5233
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011137
(v1.0)
1452514_a_atMm.247073KitNM_001122733.1,NM_021099.316590
588.975592.275290.7500
0011137
(v1.0)
1415900_a_atMm.247073KitNM_001122733.1,NM_021099.316590
0104.425000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011137
(v1.0)
A_51_P355906KitNM_02109916590
1 (0.877 to 1.13)1P1.386 (1.235 to 1.563)9.09E-06P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011137
(v1.0)
Kit16590
10541654