DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011476
GeneLarp4b
SynonymsD13Wsu64e
Larp5
Desc.La ribonucleoprotein domain family, member 4B
LocusNM_172585 chr13:9093151-9172336(+)
DB links


Entrez 217980
MGI 106330
Ensembl ENSMUSG00000033499
Featureprotein-coding
GO(BP)
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011418
(v2.0)
Larp4bNM_172585217980
16.788422.463332.125643.896842.855915.589714.612734.105141.89111.9878
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011476
(v1.0)
Larp4b217980
Major ZGA0.9341
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011418
(v2.0)
Larp4b217980
701/4100.2604492/4100.146590/4101.3873212/4100.3777109/4100.1451691/4100.1534
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011418
(v2.0)
Larp4b217980
354/1490.7318229/1490.50185/1492.6952190/1491.665417/149-1.0312143/149-0.6531
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011418
(v2.0)
Larp4b217980
34.957312527.97
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011418
(v2.0)
Larp4b217980
8.3186929.04
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011476
(v1.0)
Larp4bNM_172585217980
23.349122.270232.677929.710410.2537
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011476
(v1.0)
Larp4bFR065803,FR150883,FR155211,FR239218,FR323598,NM_172585217980
225.952165.747274.842263.23479.9313
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011476
(v1.0)
Larp4bNM_172585217980
24.41376.1396724.2973
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011476
(v1.0)
Larp4bNM_172585217980
23.830122.046625.2643
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011476
(v1.0)
Larp4bFR065803,FR150883,FR155211,FR239218,FR323598,NM_172585217980
560.17679.752
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011476
(v1.0)
Larp4bNM_172585217980
24.42786.0555827.709
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011476
(v1.0)
Larp4bNM_172585217980
30.254728.686629.0365
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011476
(v1.0)
Larp4bFR065803,FR150883,FR155211,FR239218,FR323598,NM_172585217980
222.596239.408
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011476
(v1.0)
Larp4bNM_172585217980
52.339628.6276
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011476
(v1.0)
Larp4bNM_172585217980
7.632717.1622
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011476
(v1.0)
16484K0423B05-3Mm.28600A630096F19217980
U014531NAP006503-001TC925249U,F,22.75092.88582.71212.86352.56892.70422.7873
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011476
(v1.0)
1434597_atMm.234944Larp4bNM_172585.2217980
439.925403.925317.75655.3751012.4
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011476
(v1.0)
A_52_P513167Larp5NM_172585217980
11P1.3560.202P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011476
(v1.0)
Larp5217980
110.751.251.50.75