DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011637
GeneLimk1
Synonyms
Desc.LIM-domain containing, protein kinase
LocusNM_010717 chr5:135131909-135164460(-)
DB links


Entrez 16885
MGI 104572
Ensembl ENSMUSG00000029674
Vega OTTMUSG00000026202
Featureprotein-coding
GO(BP)
  •   5 Terms
      protein phosphorylation (GO:0006468)
      phosphorylation (GO:0016310)
      positive regulation of actin filament bundle assembly (GO:0032233)
      positive regulation of axon extension (GO:0045773)
      negative regulation of ubiquitin-protein ligase activity (GO:0051444)
GO(MF)
GO(CC)
KEGG
  •   3 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011577
(v2.0)
Limk1NM_01071716885
5.7533918.509834.16511.5156.785143.542943.7962246.6566.114654.11382
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011637
(v1.0)
Limk116885
Minor ZGA0.97803
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011577
(v2.0)
Limk116885
712/4490.152430/449-0.1782277/4492.871617/4491.7841121/4490.1646895/4490.3951
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011577
(v2.0)
Limk116885
334/1870.3224190/187-0.0927266/1874.0242578/1872.942556/1870.312374/1870.3988
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011577
(v2.0)
Limk116885
68.851813252.16
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011577
(v2.0)
Limk116885
14.5547619.15
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011637
(v1.0)
Limk1NM_01071716885
19.249823.83138.576094.710662.66889
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011637
(v1.0)
Limk1NM_01071716885
266.105324.273106.3631.653928.3874
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011637
(v1.0)
Limk1NM_01071716885
20.12742.1040726.0005
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011637
(v1.0)
Limk1NM_01071716885
19.646323.59234.6099
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011637
(v1.0)
Limk1NM_01071716885
334.879325.086
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011637
(v1.0)
Limk1NM_01071716885
20.13912.0752637.959
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011637
(v1.0)
Limk1NM_01071716885
7.940134.548334.25316
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011637
(v1.0)
Limk1NM_01071716885
5.514585.22293
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011637
(v1.0)
Limk1NM_01071716885
21.46383.89615
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011637
(v1.0)
Limk1NM_01071716885
2.650570.709778
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011637
(v1.0)
2646C0347C01-3Mm.222344Limk116885
NAP038026-1TC9393802.79692.81692.87932.84082.61722.71662.6416
0011637
(v1.0)
6140H3018E07-3Mm.218670Limk116885
NAP033974-1TC8177092.53782.6132.70162.58552.47052.50072.4044
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011637
(v1.0)
1417627_a_atMm.15409Limk1NM_010717.216885
95.8750121.87500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011637
(v1.0)
A_51_P484030Limk1NM_01071716885
11P0.7280.193P
Proteome N/A