DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011686
GeneLmna
SynonymsDhe
lamin A/C
Desc.lamin A
LocusNM_001002011 chr3:88285071-88307254(-)
NM_019390 chr3:88287128-88297221(-)
NM_001111102 chr3:88287128-88307254(-)
DB links


Entrez 16905
MGI 96794
Ensembl ENSMUSG00000028063
Vega OTTMUSG00000030317
Featureprotein-coding
GO(BP)
  •   11 Terms
      nucleus organization (GO:0006997)
      nuclear envelope organization (GO:0006998)
      muscle organ development (GO:0007517)
      establishment of cell polarity (GO:0030010)
      regulation of cell migration (GO:0030334)
      establishment or maintenance of microtubule cytoskeleton polarity (GO:0030951)
      protein localization to nucleus (GO:0034504)
      sterol regulatory element binding protein import into nucleus (GO:0035105)
      regulation of apoptotic process (GO:0042981)
      ventricular cardiac muscle cell development (GO:0055015)
      positive regulation of cell aging (GO:0090343)
GO(MF)
GO(CC)
KEGG
  •   3 Terms
      Hypertrophic cardiomyopathy (HCM) (mmu05410)
      Arrhythmogenic right ventricular cardiomyopathy (ARVC) (mmu05412)
      Dilated cardiomyopathy (mmu05414)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011630
(v2.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
96.270455.976766.652544.67125.368220.11232.08287.795114.646526.047
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011686
(v1.0)
Lmna16905
Maternal RNA0.97021
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011630
(v2.0)
Lmna16905
715/517-0.045424/517-0.4014195/5172.1683604/5171.5511194/5170.63951145/5170.5469
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011630
(v2.0)
Lmna16905
367/2040.3329204/204-0.1156179/2043.3371533/2042.7019139/2041.4855725/2041.226
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011630
(v2.0)
Lmna16905
95.134612576.11
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011630
(v2.0)
Lmna16905
26.21435250.41
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011686
(v1.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
58.847646.707933.554117.7526166.505
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011686
(v1.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
169.084114.95145.575621.9351289.971
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011686
(v1.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
61.530635.570950.9593
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011686
(v1.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
60.059946.238964.6266
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011686
(v1.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
177.156261.332
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011686
(v1.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
61.566335.083770.8802
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011686
(v1.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
31.065817.140810.2352
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011686
(v1.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
61.899333.9788
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011686
(v1.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
93.92537.19581
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011686
(v1.0)
LmnaNM_001002011,NM_001111102,NM_01939016905
2.777661.77775
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011686
(v1.0)
1095C0177G03-3Mm.3438Lmna16905
U024254NAP001300-001Lmna;TC940143,TC940136,TC940135,TC940132,TC810679P11516U,F,23.21743.27323.62053.99372.9853.28713.4864
0011686
(v1.0)
16224K0344C06-3Mm.3438Lmna16905
U024254NAP001300-001Lmna;TC940132,TC810679P11516U,F,22.82872.89562.68112.76382.56512.73672.8158
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011686
(v1.0)
1421654_a_atMm.243014LmnaNM_001002011.2,NM_001111102.1,NM_019390.216905
132.75116.72596.52564.975235.5
0011686
(v1.0)
1425472_a_atMm.243014LmnaNM_001002011.2,NM_001111102.1,NM_019390.216905
00148.400
0011686
(v1.0)
1457670_s_atMm.243014LmnaNM_001002011.2,NM_001111102.1,NM_019390.216905
256.775257.4312.9250483.95
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011686
(v1.0)
A_51_P313561LmnaNM_01939016905
11P0.4730.0966P
0011686
(v1.0)
A_51_P313566LmnaNM_01939016905
11P1.4680.162P
0011686
(v1.0)
A_52_P137765LmnaNM_01939016905
11P1.2790.247P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011686
(v1.0)
Lmna16905
240250