DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011705
GeneLoh12cr1
Synonyms
Desc.loss of heterozygosity, 12, chromosomal region 1 homolog (human)
LocusNM_001170479 chr6:134589530-134661202(+)
NM_026371 chr6:134590958-134661202(+)
DB links


Entrez 67774
MGI 1915024
Ensembl ENSMUSG00000042992
Vega OTTMUSG00000023754
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011649
(v2.0)
Loh12cr1NM_001170479,NM_02637167774
4.5799160.835199.181324.569111.72332.853323.6089810211.53322.74463
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011705
(v1.0)
Loh12cr167774
Minor ZGA0.99511
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011649
(v2.0)
Loh12cr167774
601/3530.2542403/3530.074752/3530.8167125/353-0.165260/353-0.4919360/353-0.569
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011649
(v2.0)
Loh12cr167774
292/1270.684148/1270.103844/1271.9726102/1271.000814/127-1.0705122/127-0.6508
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011649
(v2.0)
Loh12cr167774
66.224612752.15
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011649
(v2.0)
Loh12cr167774
17.71816726.44
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011705
(v1.0)
Loh12cr1NM_001170479,NM_02637167774
63.243868.97818.3028.141922.56292
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011705
(v1.0)
Loh12cr1NM_001170479,NM_02637167774
77.49476.909220.94039.732093.11538
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011705
(v1.0)
Loh12cr1NM_001170479,NM_02637167774
66.12721.6736375.2565
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011705
(v1.0)
Loh12cr1NM_001170479,NM_02637167774
64.546768.285475.5964
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011705
(v1.0)
Loh12cr1NM_001170479,NM_02637167774
78.085986.5816
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011705
(v1.0)
Loh12cr1NM_001170479,NM_02637167774
66.16561.6507182.9115
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011705
(v1.0)
Loh12cr1NM_001170479,NM_02637167774
16.94487.861358.01942
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011705
(v1.0)
Loh12cr1NM_001170479,NM_02637167774
9.626859.4455
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011705
(v1.0)
Loh12cr1NM_001170479,NM_02637167774
37.36962.49937
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011705
(v1.0)
Loh12cr1NM_001170479,NM_02637167774
94.825740.8421
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011705
(v1.0)
1451918_a_atMm.41892Loh12cr1NM_026371.3,NM_001170479.167774
251.675296.125232.42500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011705
(v1.0)
A_51_P498947Loh12cr1NM_02637167774
11P0.4990.0995P
Proteome N/A