DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011795
GeneLrrc28
Synonyms
Desc.leucine rich repeat containing 28
LocusNM_175124 chr7:74658296-74790122(-)
NR_028143 chr7:74658296-74790122(-)
NR_028144 chr7:74658296-74790122(-)
NM_027413 chr7:74739285-74790122(-)
DB links


Entrez 67867
MGI 1915689
Ensembl ENSMUSG00000030556
Featureprotein-coding
GO(BP)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011739
(v2.0)
Lrrc28NM_027413,NM_175124,NR_028143,NR_02814467867
59.126599.1376120.99118.35438.492733.988664.11639120.5959.967645.59592
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011795
(v1.0)
Lrrc2867867
Maternal RNA0.97225
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011739
(v2.0)
Lrrc2867867
628/3840.1964513/3840.3009309/3843.2473812/3842.40460/384-0.612386/384-0.59
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011739
(v2.0)
Lrrc2867867
295/1710.2725236/1710.3468293/1714.284736/1713.417918/171-1.1468100/171-1.3601
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011739
(v2.0)
Lrrc2867867
57.220814040.87
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011739
(v2.0)
Lrrc2867867
15.1468717.41
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011795
(v1.0)
Lrrc28NM_027413,NM_17512467867
103.03283.415713.6545.917532.87847
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011795
(v1.0)
Lrrc28NM_027413,NM_175124,NR_028143,NR_02814467867
319.342286.39629.326910.80225.97586
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011795
(v1.0)
Lrrc28NM_027413,NM_17512467867
107.72921.615591.0083
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011795
(v1.0)
Lrrc28NM_027413,NM_17512467867
105.15482.578189.2054
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011795
(v1.0)
Lrrc28NM_027413,NM_175124,NR_028143,NR_02814467867
158.762184.325
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011795
(v1.0)
Lrrc28NM_027413,NM_17512467867
107.79221.319597.8375
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011795
(v1.0)
Lrrc28NM_027413,NM_17512467867
12.64145.713616.93811
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011795
(v1.0)
Lrrc28NM_027413,NM_175124,NR_028143,NR_02814467867
9.1944214.2518
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011795
(v1.0)
Lrrc28NM_027413,NM_17512467867
58.208546.7685
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011795
(v1.0)
Lrrc28NM_027413,NM_17512467867
17.086628.6999
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011795
(v1.0)
1430145_atMm.31247Lrrc28NM_175124.5,NM_027413.167867
1211.7251594.7751434.57591.02561.775
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011795
(v1.0)
A_51_P147445Lrrc28AK05015467867
11P1.0290.825P
0011795
(v1.0)
A_52_P238136Lrrc28NM_17512467867
11P0.3390.0586P
Proteome N/A