DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0013719
GeneNbr1
Synonyms
Desc.neighbor of Brca1 gene 1
LocusNM_001252220 chr11:101413421-101443265(+)
NM_001252223 chr11:101413968-101443265(+)
NM_008676 chr11:101413968-101443265(+)
NM_001252222 chr11:101413968-101443265(+)
DB links


Entrez 17966
MGI 108498
Ensembl ENSMUSG00000017119
Vega OTTMUSG00000002872
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014171
(v2.0)
Nbr1NM_001252220,NM_001252222,NM_001252223,NM_00867617966
163.96550.9075101.06251.469537.287837.819737.704689.237733.787637.7541
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0013719
(v1.0)
Nbr117966
Minor ZGA0.89311
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014171
(v2.0)
Nbr117966
751/4150.3422608/4150.43391216/4155.11163599/4154.439424/415-2.0097118/415-2.3987
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014171
(v2.0)
Nbr117966
338/1820.3784284/1820.52331064/1826.05682623/1825.161210/182-2.023241/182-2.7051
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014171
(v2.0)
Nbr117966
49.475414933.2
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014171
(v2.0)
Nbr117966
12.96810911.9
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013719
(v1.0)
Nbr1NM_00867617966
53.515370.640338.597626.090226.8051
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0013719
(v1.0)
Nbr1NM_00867617966
419.255541.406255.01231.652235.887
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0013719
(v1.0)
Nbr1NM_00867617966
55.955160.697777.0702
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0013719
(v1.0)
Nbr1NM_00867617966
54.617769.93167.3294
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0013719
(v1.0)
Nbr1NM_00867617966
708.267582.997
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0013719
(v1.0)
Nbr1NM_00867617966
55.987659.866373.8446
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0013719
(v1.0)
Nbr1NM_00867617966
35.735325.191123.3811
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0013719
(v1.0)
Nbr1NM_00867617966
167.573171.422
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0013719
(v1.0)
Nbr1NM_00867617966
27.385941.3298
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0013719
(v1.0)
Nbr1NM_00867617966
19.62428.7461
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0013719
(v1.0)
10880H3104H06-3Mm.784Nbr117966
U043227NAP001043-002Nbr1;TC903633,TC903620,TC903619,TC903618P97432U,F,24.2944.22333.63683.82553.04813.45383.2451
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0013719
(v1.0)
1448343_a_atMm.784Nbr1NM_008676.217966
867.451463.71041.9519.075778.875
0013719
(v1.0)
1451897_a_atMm.784Nbr1NM_008676.217966
86.85100.175124.525044.8
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0013719
(v1.0)
A_51_P248234Nbr1NM_00867617966
11P1.0050.966P
0013719
(v1.0)
A_52_P14980Nbr1NM_00867617966
11P1.4270.187P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0013719
(v1.0)
Nbr117966
01.33201.333