DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014110
GeneNpc1
SynonymsC85354
D18Ertd139e
D18Ertd723e
lcsd
nmf164
Desc.Niemann Pick type C1
LocusNM_008720 chr18:12348203-12394895(-)
DB links


Entrez 18145
MGI 1097712
Ensembl ENSMUSG00000024413
Vega OTTMUSG00000028201
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014566
(v2.0)
Npc1NM_00872018145
47.833283.87196.259285.9384412.69474.328764.783427.7960813.88613.42257
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014110
(v1.0)
Npc118145
Maternal RNA0.99454
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014566
(v2.0)
Npc118145
673/475-0.0101418/475-0.299984/4751.0823292/4750.6266100/475-0.1884728/4750.0166
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014566
(v2.0)
Npc118145
346/1990.2839167/199-0.36777/1992.1645262/1991.715540/199-0.2512310/1990.04
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014566
(v2.0)
Npc118145
71.664513951.56
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014566
(v2.0)
Npc118145
26.25669228.54
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014110
(v1.0)
Npc1NM_00872018145
87.20794.319584.423958.808743.40269
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014110
(v1.0)
Npc1FR386296,NM_00872018145
1146.1745.569121.7244117.6353.3475
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014110
(v1.0)
Npc1NM_00872018145
91.183817.49314.71275
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014110
(v1.0)
Npc1NM_00872018145
89.00454.27625.76554
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0014110
(v1.0)
Npc1FR386296,NM_00872018145
17.435840.3704
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014110
(v1.0)
Npc1NM_00872018145
91.236817.25356.32345
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014110
(v1.0)
Npc1NM_00872018145
4.095898.505199.62145
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0014110
(v1.0)
Npc1FR386296,NM_00872018145
27.627741.8978
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014110
(v1.0)
Npc1NM_00872018145
28.98951.55182
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014110
(v1.0)
Npc1NM_00872018145
9.3688615.4302
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014110
(v1.0)
13588J0057H05-3Mm.3484Npc118145
U018422NAP037269-1O35604U,F2.35332.43952.43272.41872.4762.23992.3244
0014110
(v1.0)
18082L0057A04-3Mm.3484Npc118145
U038214NAP092478-001Npc1;TC842264O35604U,F3.27172.76662.37622.15092.4932.66292.5736
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014110
(v1.0)
1423086_atMm.3484Npc1NM_008720.218145
259.275329.542.72574.55100.65
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014110
(v1.0)
A_51_P349341Npc1NM_00872018145
11P0.6820.163P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0014110
(v1.0)
Npc118145
5735117