DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014317
GeneNup50
SynonymsNpap60
Desc.nucleoporin 50
LocusNM_016714 chr15:84753858-84773393(+)
DB links


Entrez 18141
MGI 1351502
Ensembl ENSMUSG00000016619
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014780
(v2.0)
Nup50NM_01671418141
19.393124.097941.179417.29929.2688616.21588.1132635.912.226718.7037
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014317
(v1.0)
Nup5018141
Minor ZGA0.96549
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014780
(v2.0)
Nup5018141
791/4630.2593547/4630.1241824/4634.39712263/4633.613339/463-1.4881225/463-1.6339
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014780
(v2.0)
Nup5018141
476/2000.7353326/2000.5863771/2005.46471978/2004.619916/200-1.5283111/200-1.4364
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014780
(v2.0)
Nup5018141
67.908616341.66
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014780
(v2.0)
Nup5018141
23.479411320.78
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014317
(v1.0)
Nup50NM_01671418141
25.053228.586912.8886.423825.71868
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014317
(v1.0)
Nup50NM_01671418141
26.694627.698912.91196.413785.7083
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014317
(v1.0)
Nup50NM_01671418141
26.19547.0922531.1889
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014317
(v1.0)
Nup50NM_01671418141
25.569328.299926.5679
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0014317
(v1.0)
Nup50NM_01671418141
28.124327.7816
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014317
(v1.0)
Nup50NM_01671418141
26.21066.9951129.1388
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014317
(v1.0)
Nup50NM_01671418141
11.93236.202458.4593
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0014317
(v1.0)
Nup50NM_01671418141
6.344519.08492
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014317
(v1.0)
Nup50NM_01671418141
43.373118.4222
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014317
(v1.0)
Nup50NM_01671418141
23.350817.9657
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014317
(v1.0)
18151L0065D07-3Mm.1794091700030K07Rik69508
U043466NAP098724-001Nup50;TC813965Q9D9R2U,F,23.72413.69543.22363.35783.22663.29263.2492
0014317
(v1.0)
19480L0275B12-3Mm.28379Npap6018141
U043466NAP012336-001Nup50;TC813965Q9D9R2U,F,23.33783.32423.42943.67843.71353.6623.6295
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014317
(v1.0)
1450722_atMm.28379Nup50NM_016714.218141
267.825218.775421.5275.1160.225
0014317
(v1.0)
1428328_atMm.28379Nup50NM_016714.218141
461.85491.375432.2250321.75
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014317
(v1.0)
A_51_P122521Nup50NM_01671418141
11P0.5670.146P
0014317
(v1.0)
A_51_P411296Nup50NM_01671418141
11P0.1660.0486P
0014317
(v1.0)
A_51_P411297Nup50NM_01671418141
1 (0.937 to 1.112)1P0.434 (0.386 to 0.464)7.73E-08P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0014317
(v1.0)
Nup5018141
010010