DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014323
GeneNup88
SynonymsNup84
Prei2
Desc.nucleoporin 88
LocusNM_172394 chr11:70756573-70783475(-)
NM_001083331 chr11:70756584-70783464(-)
DB links


Entrez 19069
MGI 104900
Ensembl ENSMUSG00000040667
Vega OTTMUSG00000006081
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014786
(v2.0)
Nup88NM_001083331,NM_001276406,NM_172394,NR_07508719069
21.238891.8847154.70414.724335.32377.095858.3957127.67733.74581.5014
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014323
(v1.0)
Nup8819069
Minor ZGA0.96152
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014786
(v2.0)
Nup8819069
623/456-0.0625499/4560.0138259/4562.7527629/4561.78977/456-3.788282/456-3.0514
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014786
(v2.0)
Nup8819069
291/2010.0209231/2010.0841248/2013.8254565/2012.80693/201-3.622839/201-2.9172
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014786
(v2.0)
Nup8819069
58.126612945.06
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014786
(v2.0)
Nup8819069
18.94268721.77
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014323
(v1.0)
Nup88NM_001083331,NM_17239419069
96.1135107.66211.017324.608141.6537
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014323
(v1.0)
Nup88NM_001083331,NM_17239419069
231.086234.70726.219570.3898132.814
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014323
(v1.0)
Nup88NM_001083331,NM_17239419069
100.4957.81239117.461
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014323
(v1.0)
Nup88NM_001083331,NM_17239419069
98.0935106.58195.2265
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0014323
(v1.0)
Nup88NM_001083331,NM_17239419069
141.004121.586
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014323
(v1.0)
Nup88NM_001083331,NM_17239419069
100.5547.70538104.441
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014323
(v1.0)
Nup88NM_001083331,NM_17239419069
10.200323.760123.5556
SOLiD_NMNR_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014323
(v1.0)
Nup88NM_001083331,NM_17239419069
50.622315.3095
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014323
(v1.0)
Nup88NM_001083331,NM_17239419069
55.821746.4866
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0014323
(v1.0)
9808H3086F12-3Nup8819069
U033011NAP093302-001Nup88;Prei2;TC930738,TC930209,TC930206,TC826876U,F,23.66853.73513.27023.37092.92483.05572.9975
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014323
(v1.0)
1428073_a_atMm.288962Nup88NM_001083331.1,NM_172394.219069
1122.3751589.525437.975468.95615.85
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014323
(v1.0)
A_51_P237945Nup88AK02856319069
11P0.8650.383P
0014323
(v1.0)
A_52_P9419Nup88NM_17239419069
11P0.7470.226P
Proteome N/A