DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0014413
GeneOgfod1
Synonyms
Desc.2-oxoglutarate and iron-dependent oxygenase domain containing 1
LocusNM_177767 chr8:96561098-96591822(+)
NM_001093757 chr8:96561098-96591822(+)
DB links


Entrez 270086
MGI 2442978
Ensembl ENSMUSG00000033009
Vega OTTMUSG00000023230
Featureprotein-coding
GO(BP)
  •   1 Terms
GO(MF)
  •   7 Terms
      iron ion binding (GO:0005506)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      L-ascorbic acid binding (GO:0031418)
      metal ion binding (GO:0046872)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014877
(v2.0)
Ogfod1NM_001093757,NM_177767270086
3.06423.539516.465058.0579911.32175.291147.257646.134799.07753.18742
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0014413
(v1.0)
Ogfod1270086
MGA0.92568
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014877
(v2.0)
Ogfod1270086
680/4450.0987474/445-0.0251301/4453.003926/4452.381927/445-1.946190/445-1.8189
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2014877
(v2.0)
Ogfod1270086
335/1680.4805221/1680.2779280/1684.2426809/1683.579313/168-1.562593/168-1.4378
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014877
(v2.0)
Ogfod1270086
54.857714837.07
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2014877
(v2.0)
Ogfod1270086
20.949811218.71
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0014413
(v1.0)
Ogfod1NM_001093757,NM_177767270086
3.678724.469035.995217.873185.14173
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0014413
(v1.0)
Ogfod1NM_001093757,NM_177767270086
3.846441.120714.87581
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0014413
(v1.0)
Ogfod1NM_001093757,NM_177767270086
3.75454.424154.54814
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0014413
(v1.0)
Ogfod1NM_001093757,NM_177767270086
3.848671.105364.98825
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0014413
(v1.0)
Ogfod1NM_001093757,NM_177767270086
5.550637.601876.26217
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0014413
(v1.0)
Ogfod1NM_001093757,NM_177767270086
148.63498.5114
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0014413
(v1.0)
Ogfod1NM_001093757,NM_177767270086
2.512134.14289
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0014413
(v1.0)
Ogfod1NM_001093757,NM_177767270086
0.04205140.274947
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0014413
(v1.0)
1448096_atMm.251085Ogfod1NM_177767.4,NM_001093757.1270086
055.163.0250112.2
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0014413
(v1.0)
A_52_P1944814930415J21RikNM_177767270086
11P1.0240.903P
0014413
(v1.0)
A_52_P2595584930415J21RikNM_177767270086
11P0.7310.317P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0014413
(v1.0)
Ogfod1270086
001001