DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015696
GeneP4ha1
SynonymsP4ha
Desc.procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
LocusNM_011030 chr10:58786044-58836052(+)
DB links


Entrez 18451
MGI 97463
Ensembl ENSMUSG00000019916
Vega OTTMUSG00000034134
Featureprotein-coding
GO(BP)
  •   3 Terms
      peptidyl-proline hydroxylation to 4-hydroxy-L-proline (GO:0018401)
      collagen fibril organization (GO:0030199)
      oxidation-reduction process (GO:0055114)
GO(MF)
  •   8 Terms
      procollagen-proline 4-dioxygenase activity (GO:0004656)
      iron ion binding (GO:0005506)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      L-ascorbic acid binding (GO:0031418)
      metal ion binding (GO:0046872)
GO(CC)
KEGG
  •   2 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016163
(v2.0)
P4ha1NM_01103018451
14.829328.241719.65635.192388.7690539.087743.054416.33937.7104543.1888
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015696
(v1.0)
P4ha118451
Maternal RNA0.97705
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016163
(v2.0)
P4ha118451
600/3920.101433/3920.0272123/3921.8966424/3921.438798/3920.0572545/392-0.1236
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016163
(v2.0)
P4ha118451
307/1720.3213167/172-0.157866/1722.1425183/1721.407634/172-0.2737162/172-0.6807
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016163
(v2.0)
P4ha118451
47.866314133.95
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016163
(v2.0)
P4ha118451
11.512210211.29
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015696
(v1.0)
P4ha1NM_01103018451
29.350213.60823.870066.0954630.2766
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015696
(v1.0)
P4ha1NM_01103018451
1285.81667.9256.9926814.88021492.11
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015696
(v1.0)
P4ha1NM_01103018451
30.68845.4232414.8469
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015696
(v1.0)
P4ha1NM_01103018451
29.954913.471612.1425
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015696
(v1.0)
P4ha1NM_01103018451
827.358218.074
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015696
(v1.0)
P4ha1NM_01103018451
30.70625.3489613.3174
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015696
(v1.0)
P4ha1NM_01103018451
3.583075.885415.36744
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015696
(v1.0)
P4ha1NM_01103018451
104.21724.341
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015696
(v1.0)
P4ha1NM_01103018451
9.043640.604575
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015696
(v1.0)
P4ha1NM_01103018451
0.4907091.0409
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015696
(v1.0)
11551H3118E07-5P4ha118451
U011546NAP004404-001P4ha1;TC881380,TC806364Q60715U,F2.48882.78062.73312.59682.30792.47192.3608
0015696
(v1.0)
17930L0033G06-3Mm.2212P4ha118451
U011546NAP004404-001P4ha1;TC881380,TC806364Q60715U,F2.6262.82832.92892.82282.59272.86272.5547
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015696
(v1.0)
1452094_atMm.2212P4ha1NM_011030.218451
347.6598.55166.77589.175.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015696
(v1.0)
A_51_P458067P4ha1NM_01103018451
11P1.9090.136P
Proteome N/A