DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015709
GenePabpn1
SynonymsPabp3
poly(A) binding protein II
Desc.poly(A) binding protein, nuclear 1
LocusNM_019402 chr14:55512980-55517764(+)
DB links


Entrez 54196
MGI 1859158
Ensembl ENSMUSG00000022194
Ensembl ENSMUSG00000092232
Vega OTTMUSG00000032813
Vega OTTMUSG00000037620
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016176
(v2.0)
Pabpn1NM_01940254196
73.24876.4071218.724215.395196.206143.96850.2058232.318193.617160.995
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015709
(v1.0)
Pabpn154196
2-Cell Transient0.8412
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016176
(v2.0)
Pabpn154196
782/3780.5348530/3780.3705828/3784.68852847/3784.235223/378-1.9353161/378-1.821
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016176
(v2.0)
Pabpn154196
380/1860.5156256/1860.343651/1865.31951955/1864.70648/186-2.343458/186-2.2511
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016176
(v2.0)
Pabpn154196
75.706815050.47
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016176
(v2.0)
Pabpn154196
29.66269531.22
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015709
(v1.0)
Pabpn1NM_01940254196
79.4425151.877160.374136.09136.0754
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015709
(v1.0)
Pabpn1NM_01940254196
405.404634.412734.024679.505147.063
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015709
(v1.0)
Pabpn1NM_01940254196
83.064526.7875165.701
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015709
(v1.0)
Pabpn1NM_01940254196
81.0791150.352172.635
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015709
(v1.0)
Pabpn1NM_01940254196
2691.792738.63
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015709
(v1.0)
Pabpn1NM_01940254196
83.112726.4206189.34
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015709
(v1.0)
Pabpn1NM_01940254196
148.481131.402134.2
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015709
(v1.0)
Pabpn1NM_01940254196
866.003918.722
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015709
(v1.0)
Pabpn1NM_01940254196
110.16926.4319
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015709
(v1.0)
Pabpn1NM_01940254196
306.61365.074
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015709
(v1.0)
13790J0205D03-3Mm.205791Pabpn154196
U015637NAP008545-001Pabpn1;TC909058,TC909056,TC909054,TC909052,TC909050O35935U,F,24.86184.64814.4875.06324.06864.49464.4534
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015709
(v1.0)
1415728_atMm.7723Pabpn1NM_019402.254196
121.2212.225197.1130.52584.925
0015709
(v1.0)
1422848_a_atMm.7723Pabpn1NM_019402.254196
798.752087.7252554.21127.375954.675
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015709
(v1.0)
A_51_P228916Pabpn1NM_01940254196
11P1.1860.337P
0015709
(v1.0)
A_52_P64783Pabpn1AK03217254196
11P0.06130.0227P
0015709
(v1.0)
A_52_P869483Pabpn1NM_01940254196
11P1.1870.335P
Proteome N/A