DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015724
GenePafah1b1
SynonymsLIS-1
Lis1
lissencephaly-1 protein
Mdsh
PAF-AH 45
Pafaha
Desc.platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
LocusNR_037610 chr11:74487451-74537360(-)
NM_013625 chr11:74487451-74537886(-)
DB links


Entrez 18472
MGI 109520
Ensembl ENSMUSG00000020745
Vega OTTMUSG00000006184
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016191
(v2.0)
Pafah1b1NM_013625,NR_03761018472
56.305757.162574.706737.443342.458630.376161.369456.755337.810728.0991
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015724
(v1.0)
Pafah1b118472
Minor ZGA0.97227
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016191
(v2.0)
Pafah1b118472
726/3090.7177480/3090.5178444/3094.07171254/3093.341684/3090.1764348/309-0.4263
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016191
(v2.0)
Pafah1b118472
470/1441.1882243/1440.6351437/1445.08921155/1444.311319/144-0.831394/144-1.2016
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016191
(v2.0)
Pafah1b118472
32.402412625.72
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016191
(v2.0)
Pafah1b118472
11.335810311.01
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015724
(v1.0)
Pafah1b1NM_01362518472
59.380451.468427.812829.377543.152
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015724
(v1.0)
Pafah1b1NM_013625,NR_03761018472
58.306246.320324.076225.126148.9659
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015724
(v1.0)
Pafah1b1NM_01362518472
62.087720.549356.1531
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015724
(v1.0)
Pafah1b1NM_01362518472
60.603750.951641.8056
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015724
(v1.0)
Pafah1b1NM_013625,NR_03761018472
45.774638.754
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015724
(v1.0)
Pafah1b1NM_01362518472
62.123720.267945.851
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015724
(v1.0)
Pafah1b1NM_01362518472
25.750328.365226.087
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015724
(v1.0)
Pafah1b1NM_013625,NR_03761018472
24.854522.2599
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015724
(v1.0)
Pafah1b1NM_01362518472
107.8918.324
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015724
(v1.0)
Pafah1b1NM_01362518472
9.7518316.6909
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015724
(v1.0)
8175H3061A06-3Mm.56337Pafah1b118472
U033069NAP097767-001Pafah1b1;TC842099P43035U,F,23.4313.36732.65793.0162.79852.82842.8505
0015724
(v1.0)
9085H3076C06-3Mm.182249Pafah1b118472
NAP035721-1TC9376602.2482.44062.54062.54452.31612.4372.4398
0015724
(v1.0)
12681H3149G01-3Mm.102814Pafah1b118472
U044102NAP049997-1TC8336192.99972.76752.73252.84832.87512.85492.9212
0015724
(v1.0)
17217K0542H12-3Mm.56337Pafah1b118472
U033069NAP097767-001Pafah1b1;P43035U,F,22.89532.83752.35711.80832.10162.15012.3169
0015724
(v1.0)
21966L0929D12-3Mm.56337Pafah1b118472
U033069NAP097767-001Pafah1b1;P43035U,F,23.34983.41682.81432.87662.98453.07413.1995
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015724
(v1.0)
1448578_atMm.397111Pafah1b1NM_013625.418472
112.85210.87596.450111.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015724
(v1.0)
A_51_P291388Pafah1b1NM_01362518472
11P1.2110.306P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0015724
(v1.0)
Pafah1b118472
111011151121