DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015790
GeneParn
SynonymsDAN
Desc.poly(A)-specific ribonuclease (deadenylation nuclease)
LocusNM_028761 chr16:13538057-13668263(-)
DB links


Entrez 74108
MGI 1921358
Ensembl ENSMUSG00000022685
Featureprotein-coding
GO(BP)
  •   3 Terms
      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
      nuclear-transcribed mRNA poly(A) tail shortening (GO:0000289)
      mRNA catabolic process (GO:0006402)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016258
(v2.0)
ParnNM_02876174108
9.1262215.754628.008910.496212.278311.2668.323122.810410.758312.7071
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015790
(v1.0)
Parn74108
Minor ZGA0.92135
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016258
(v2.0)
Parn74108
688/4680.043454/468-0.1597358/4683.1816869/4682.218115/468-2.8254111/468-2.6588
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016258
(v2.0)
Parn74108
290/1930.0743188/193-0.1532132/1932.9759342/1932.14226/193-2.758144/193-2.691
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016258
(v2.0)
Parn74108
47.252716428.81
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016258
(v2.0)
Parn74108
23.03667729.92
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015790
(v1.0)
ParnNM_02876174108
16.371219.45277.815048.505075.87019
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015790
(v1.0)
ParnNM_02876174108
50.496928.70322.2904218.7522.108
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015790
(v1.0)
ParnNM_02876174108
17.11763.3375521.2233
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015790
(v1.0)
ParnNM_02876174108
16.708419.257416.9091
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015790
(v1.0)
ParnNM_02876174108
162.511137.392
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015790
(v1.0)
ParnNM_02876174108
17.12753.2918418.5453
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015790
(v1.0)
ParnNM_02876174108
7.235518.211987.47452
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015790
(v1.0)
ParnNM_02876174108
217.32713.2705
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015790
(v1.0)
ParnNM_02876174108
7.048452.3822
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015790
(v1.0)
ParnNM_02876174108
2.792432.40137
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015790
(v1.0)
15380K0133A01-3Mm.182350Parn74108
U036802NAP002668-001Parn;TC836741,TC836739Q9DC463.52533.50813.37913.62293.80863.73593.8341
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015790
(v1.0)
1425422_a_atMm.182350ParnNM_028761.374108
159.65163.35124.7750104.25
0015790
(v1.0)
1437334_x_atMm.182350ParnNM_028761.374108
303.6337.85247.675178.5254.3
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015790
(v1.0)
A_51_P485391ParnNM_02876174108
11P1.9240.114P
0015790
(v1.0)
A_52_P25567ParnNM_02876174108
11P0.5530.208P
Proteome N/A