DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016355
GenePkp4
SynonymsArmrp
p0071
Desc.plakophilin 4
LocusNM_026361 chr2:58998907-59193262(+)
NM_175464 chr2:58998907-59193262(+)
DB links


Entrez 227937
MGI 109281
Ensembl ENSMUSG00000026991
Vega OTTMUSG00000012706
Featureprotein-coding
GO(BP)
  •   3 Terms
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016836
(v2.0)
Pkp4NM_026361,NM_175464227937
8.4304436.306989.082357.539719.60813.24716.8425398.078621.484613.3244
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016355
(v1.0)
Pkp4227937
Minor ZGA0.95503
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016836
(v2.0)
Pkp4227937
666/4280.1248491/4280.0817157/4282.123378/4281.1474231/4281.16031323/4281.0271
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016836
(v2.0)
Pkp4227937
355/1640.5983225/1640.3382149/1643.3694341/1642.3696102/1641.3506520/1641.0609
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016836
(v2.0)
Pkp4227937
49.876114235.12
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016836
(v2.0)
Pkp4227937
5.9811936.43
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016355
(v1.0)
Pkp4NM_026361,NM_175464227937
37.738461.553542.801113.5634.86377
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016355
(v1.0)
Pkp4FR049111,FR104291,NM_026361,NM_175464227937
416.084450.604383.516108.02956.6852
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016355
(v1.0)
Pkp4NM_026361,NM_175464227937
39.4593.0832567.1562
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016355
(v1.0)
Pkp4NM_026361,NM_175464227937
38.515960.935572.5766
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016355
(v1.0)
Pkp4FR049111,FR104291,NM_026361,NM_175464227937
448.179581.287
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016355
(v1.0)
Pkp4NM_026361,NM_175464227937
39.48193.0410279.5996
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016355
(v1.0)
Pkp4NM_026361,NM_175464227937
39.627213.095614.8667
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016355
(v1.0)
Pkp4FR049111,FR104291,NM_026361,NM_175464227937
87.325796.1435
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016355
(v1.0)
Pkp4NM_026361,NM_175464227937
86.1989.6979
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016355
(v1.0)
Pkp4NM_026361,NM_175464227937
23.518526.4256
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016355
(v1.0)
1452209_atMm.260938Pkp4NM_026361.2,NM_175464.2227937
454.125641.125778.45131.475335.55
0016355
(v1.0)
1438677_atMm.260938Pkp4NM_026361.2,NM_175464.2227937
0486.85339.900
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016355
(v1.0)
A_51_P251245Pkp4NM_026361227937
11P0.9110.53P
0016355
(v1.0)
A_51_P414762Pkp4NM_026361227937
11P0.4290.0752P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016355
(v1.0)
Pkp4227937
500500