DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016581
GenePolr1e
Synonyms53kDa
Paf53
Praf1
Desc.polymerase (RNA) I polypeptide E
LocusNM_022811 chr4:45031497-45046564(+)
DB links


Entrez 64424
MGI 1929022
Ensembl ENSMUSG00000028318
Vega OTTMUSG00000007388
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017067
(v2.0)
Polr1eNM_001285800,NM_02281164424
2.1173314.88899.5527783.99759.89746.259694.210419.0878256.88727.46028
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016581
(v1.0)
Polr1e64424
2-Cell Transient0.95623
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017067
(v2.0)
Polr1e64424
614/470-0.127397/470-0.3589169/4702.0972392/4701.065424/470-2.1876203/470-1.8029
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017067
(v2.0)
Polr1e64424
280/1840.0924180/184-0.1471134/1843.0622277/1841.907114/184-1.5912106/184-1.3823
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017067
(v2.0)
Polr1e64424
72.582112956.27
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017067
(v2.0)
Polr1e64424
18.82157026.89
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016581
(v1.0)
Polr1eNM_02281164424
18.18917.9561875.155749.93523.6668
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016581
(v1.0)
Polr1eNM_02281164424
351.073125.3561851.731164.5560.2109
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016581
(v1.0)
Polr1eNM_02281164424
19.01830.9446798.68036
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016581
(v1.0)
Polr1eNM_02281164424
18.56387.876298.07582
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016581
(v1.0)
Polr1eNM_02281164424
116.864122.858
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016581
(v1.0)
Polr1eNM_02281164424
19.02940.931748.85729
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016581
(v1.0)
Polr1eNM_02281164424
69.582548.214447.5707
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016581
(v1.0)
Polr1eNM_02281164424
913.7391090.88
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016581
(v1.0)
Polr1eNM_02281164424
8.9769917.3725
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016581
(v1.0)
Polr1eNM_02281164424
0.1909480
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016581
(v1.0)
6697H3031F02-3Mm.130322Paf53-pending64424
U004267NAP096828-001Paf53;TC926316,TC894634,TC811323Q62034U,F,22.19522.45773.0053.39932.55112.66422.3465
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016581
(v1.0)
1419058_atMm.282932Polr1eNM_022811.264424
58.9250220.825102.77543.85
0016581
(v1.0)
1435057_x_atMm.282932Polr1eNM_022811.264424
131.7750357.35246.983.525
Agilent44K N/A
Proteome N/A