DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016668
GenePpfia1
Synonymsliprin
Liprin-alpha1
Desc.protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
LocusNM_001195086 chr7:151662660-151739634(-)
NM_001033319 chr7:151662660-151739634(-)
DB links


Entrez 233977
MGI 1924750
Ensembl ENSMUSG00000037519
Featureprotein-coding
GO(BP)
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017158
(v2.0)
Ppfia1NM_001033319,NM_001195086233977
9.71074142.031185.222174.88591.15935.7397316.7997177.04682.86796.02491
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016668
(v1.0)
Ppfia1233977
Major ZGA0.99303
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017158
(v2.0)
Ppfia1233977
666/489-0.067420/489-0.3349135/4891.7195358/4890.87894/489-0.3183702/489-0.0776
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017158
(v2.0)
Ppfia1233977
326/1850.3031173/185-0.2117124/1852.9438280/1851.914828/185-0.6477251/185-0.1583
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017158
(v2.0)
Ppfia1233977
49.655910646.85
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017158
(v2.0)
Ppfia1233977
19.25436828.32
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016668
(v1.0)
Ppfia1NM_001033319,NM_001195086233977
147.679128.105130.07263.063911.8071
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016668
(v1.0)
Ppfia1FR139674,FR253878,FR369567,NM_001033319,NM_001195086233977
672.523461.938589.447376.93376.7342
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016668
(v1.0)
Ppfia1NM_001033319,NM_001195086233977
154.4123.55132139.765
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016668
(v1.0)
Ppfia1NM_001033319,NM_001195086233977
150.721126.818131.234
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016668
(v1.0)
Ppfia1FR139674,FR253878,FR369567,NM_001033319,NM_001195086233977
1900.221973.54
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016668
(v1.0)
Ppfia1NM_001033319,NM_001195086233977
154.5023.50268143.933
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016668
(v1.0)
Ppfia1NM_001033319,NM_001195086233977
120.42760.890757.464
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016668
(v1.0)
Ppfia1FR139674,FR253878,FR369567,NM_001033319,NM_001195086233977
370.741303.756
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016668
(v1.0)
Ppfia1NM_001033319,NM_001195086233977
93.118973.345
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016668
(v1.0)
Ppfia1NM_001033319,NM_001195086233977
50.610147.7156
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016668
(v1.0)
10254H3093C11-3Mm.25118LOC233977233977
U029525NAP002089-002TC793810U,F,23.69123.61743.86223.68373.24983.483.2325
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016668
(v1.0)
1455478_atMm.272809Ppfia1NM_001195086.1,NM_001033319.2233977
920.51287.7751213.575838.4651.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016668
(v1.0)
A_51_P440954Ppfia1XM_133979233977
11P1.210.306P
0016668
(v1.0)
A_52_P449130Ppfia1XM_133979233977
11P0.4920.106P
Proteome N/A