DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016673
GenePpfibp2
SynonymsCclp1
liprin beta 2
Desc.PTPRF interacting protein, binding protein 2 (liprin beta 2)
LocusNM_008905 chr7:114738565-114888410(+)
NM_001163557 chr7:114750358-114892097(+)
DB links


Entrez 19024
MGI 894649
Ensembl ENSMUSG00000036528
Featureprotein-coding
GO(BP)
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017163
(v2.0)
Ppfibp2NM_001163557,NM_00890519024
7.0314265.07276.25419.2120538.67632.47745088.321746.00922.5658
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016673
(v1.0)
Ppfibp219024
Maternal RNA0.89232
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017163
(v2.0)
Ppfibp219024
560/491-0.3224434/491-0.293617/491-1.203837/491-2.367750/491-1.2215403/491-0.8818
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017163
(v2.0)
Ppfibp219024
225/205-0.3764171/205-0.37576/205-1.35413/205-2.558421/205-1.1913180/205-0.7819
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017163
(v2.0)
Ppfibp219024
66.065512353.71
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017163
(v2.0)
Ppfibp219024
14.16246820.83
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016673
(v1.0)
Ppfibp2NM_001163557,NM_00890519024
67.642352.99676.8619526.92960
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016673
(v1.0)
Ppfibp2NM_001163557,NM_00890519024
380.101349.04452.1144206.3410.0389349
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016673
(v1.0)
Ppfibp2NM_001163557,NM_00890519024
70.72632.5714657.8206
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016673
(v1.0)
Ppfibp2NM_001163557,NM_00890519024
69.035852.464665.4833
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016673
(v1.0)
Ppfibp2NM_001163557,NM_00890519024
1111.271132.46
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016673
(v1.0)
Ppfibp2NM_001163557,NM_00890519024
70.76732.5362471.8198
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016673
(v1.0)
Ppfibp2NM_001163557,NM_00890519024
6.353126.001631.824
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016673
(v1.0)
Ppfibp2NM_001163557,NM_00890519024
151.501149.17
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016673
(v1.0)
Ppfibp2NM_001163557,NM_00890519024
46.16316.41914
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016673
(v1.0)
Ppfibp2NM_001163557,NM_00890519024
10.650413.2691
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016673
(v1.0)
14814J0823F08-3Mm.2817Ppfibp219024
U008586NAP099430-001Ppfibp2;TC815352,TC815351O35711U,F3.01333.06532.80923.20043.34393.56263.2109
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016673
(v1.0)
1417801_a_atMm.2817Ppfibp2NM_001163557.1,NM_008905.219024
215.175155.250473.175228.8
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016673
(v1.0)
A_51_P230439Ppfibp2NM_00890519024
11P1.1030.506P
0016673
(v1.0)
A_52_P622641Ppfibp2NM_00890519024
11P0.9140.549P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016673
(v1.0)
Ppfibp219024
010020