DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016678
GenePpid
Synonymscyclophilin 40
CYP-40
cytoplasmic cyclophilin D
Ppidl
Desc.peptidylprolyl isomerase D (cyclophilin D)
LocusNM_026352 chr3:79395311-79407572(+)
DB links


Entrez 67738
MGI 1914988
Ensembl ENSMUSG00000027804
Vega OTTMUSG00000029417
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017168
(v2.0)
PpidNM_02635267738
2.6807717.033621.340263.106952.4857113.87649.501217.167744.6211128.573
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016678
(v1.0)
Ppid67738
Major ZGA0.98192
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017168
(v2.0)
Ppid67738
612/442-0.0432455/442-0.0742147/4421.9835405/4421.200590/442-0.2358531/442-0.3338
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017168
(v2.0)
Ppid67738
308/1850.2215215/1850.1001136/1853.0761375/1852.33521/185-1.0463161/185-0.7941
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017168
(v2.0)
Ppid67738
65.939614844.55
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017168
(v2.0)
Ppid67738
21.61419123.75
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016678
(v1.0)
PpidNM_02635267738
17.696414.754846.938236.387135.1693
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016678
(v1.0)
PpidNM_02635267738
10.05696.229320.078714.813818.0071
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016678
(v1.0)
PpidNM_02635267738
18.50320.98038416.0978
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016678
(v1.0)
PpidNM_02635267738
18.06114.606712.7224
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016678
(v1.0)
PpidNM_02635267738
6.325486.78144
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016678
(v1.0)
PpidNM_02635267738
18.5140.96695613.9535
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016678
(v1.0)
PpidNM_02635267738
43.457435.133230.8101
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016678
(v1.0)
PpidNM_02635267738
14.653513.6408
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016678
(v1.0)
PpidNM_02635267738
26.3651110.367
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016678
(v1.0)
PpidNM_02635267738
13.657111.4022
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016678
(v1.0)
5573H3003B03-3Mm.30242Ppid67738
U003347NAP092192-001Ppid;TC908918Q9CR16U,F,23.60943.62533.3383.4723.34073.46093.3997
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016678
(v1.0)
1417057_a_atMm.258059~Mm.295252Lamp3~PpidNM_177356.3~NM_026352.3239739
67738
196.85200.125406.5833.775866.925
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016678
(v1.0)
A_51_P101879PpidNM_02635267738
11P0.5630.11P
0016678
(v1.0)
A_52_P485700PpidNM_02635267738
11P0.7430.206P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0016678
(v1.0)
Ppid67738
443655