DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016959
GenePrpf38b
Synonyms
Desc.PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
LocusNM_025845 chr3:108705725-108714622(-)
DB links


Entrez 66921
MGI 1914171
Ensembl ENSMUSG00000027881
Vega OTTMUSG00000007286
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017455
(v2.0)
Prpf38bNM_02584566921
11.112130.123942.075527.934918.616132.666818.808238.702819.809431.6193
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016959
(v1.0)
Prpf38b66921
Minor ZGA0.96254
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017455
(v2.0)
Prpf38b66921
640/3580.3245430/3580.1478196/3582.6912459/3581.682960/358-0.512365/358-0.5695
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017455
(v2.0)
Prpf38b66921
335/1560.5867194/1560.1971192/1563.8001419/1562.73716/156-1.178295/156-1.3013
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017455
(v2.0)
Prpf38b66921
48.1317926.89
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017455
(v2.0)
Prpf38b66921
12.36171329.36
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016959
(v1.0)
Prpf38bNM_02584566921
31.304529.129820.779212.924813.2292
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016959
(v1.0)
Prpf38bNM_02584566921
259.391115.576176.004110.9483.274
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016959
(v1.0)
Prpf38bNM_02584566921
32.73174.0638131.7813
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016959
(v1.0)
Prpf38bNM_02584566921
31.949428.837328.7338
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016959
(v1.0)
Prpf38bNM_02584566921
284.623129.604
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016959
(v1.0)
Prpf38bNM_02584566921
32.75074.0081531.5142
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016959
(v1.0)
Prpf38bNM_02584566921
19.238312.479413.7167
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016959
(v1.0)
Prpf38bNM_02584566921
40.958534.2562
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016959
(v1.0)
Prpf38bNM_02584566921
378.61254.3382
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016959
(v1.0)
Prpf38bNM_02584566921
34.1729.899
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016959
(v1.0)
6169H3019F09-51110021E09Rik66921
U024535NAP094004-0011110021E09Rik;TC869244Q9CTD9U,F,23.52023.66583.62233.73363.02953.24713.0427
0016959
(v1.0)
14432J0510E11-31110021E09Rik66921
1110021E09Rik2.90722.92962.56732.50132.22362.49212.4939
0016959
(v1.0)
17374K0612F03-3Mm.410231110021E09Rik66921
U024535NAP094004-0011110021E09Rik;TC869244Q9CTD9U,F,23.53173.31663.11383.03323.34593.0993.165
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016959
(v1.0)
1452869_atMm.51049Prpf38bNM_025845.266921
137.15200.27572.350140.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016959
(v1.0)
A_52_P455691Prpf38bNM_02584566921
11P0.3310.0983P
Proteome N/A