DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016964
GenePrpf4b
SynonymsPrp4
Prp4k
Prpk
Desc.PRP4 pre-mRNA processing factor 4 homolog B (yeast)
LocusNM_013830 chr13:34967363-34994747(+)
DB links


Entrez 19134
MGI 109584
Ensembl ENSMUSG00000021413
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017460
(v2.0)
Prpf4bNM_01383019134
7.53296.83696.3228834.244736.638822.519722.85295.2985239.294218.0295
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0016964
(v1.0)
Prpf4b19134
Major ZGA0.99506
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017460
(v2.0)
Prpf4b19134
628/3580.2972427/3580.1377175/3582.5286422/3581.561941/358-1.0504295/358-0.8752
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2017460
(v2.0)
Prpf4b19134
342/1510.6631223/1510.4438171/1513.6774404/1512.730811/151-1.634951/151-2.1326
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017460
(v2.0)
Prpf4b19134
29.683715419.28
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2017460
(v2.0)
Prpf4b19134
10.43031308.02
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016964
(v1.0)
Prpf4bNM_01383019134
7.103164.3702825.489925.435215.9601
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016964
(v1.0)
Prpf4bFR224456,NM_01383019134
21.90658.388389.151392.667390.8939
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016964
(v1.0)
Prpf4bNM_01383019134
7.4272.754864.76807
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016964
(v1.0)
Prpf4bNM_01383019134
7.249494.32643.91699
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0016964
(v1.0)
Prpf4bNM_01383019134
31.073922.7506
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016964
(v1.0)
Prpf4bNM_01383019134
7.431322.717134.29602
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016964
(v1.0)
Prpf4bNM_01383019134
23.599724.558727.0608
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0016964
(v1.0)
Prpf4bFR224456,NM_01383019134
71.890973.5549
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016964
(v1.0)
Prpf4bNM_01383019134
21.355818.2012
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016964
(v1.0)
Prpf4bNM_01383019134
4.39574.52345
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016964
(v1.0)
9666H3084G06-3Mm.10027Prpf4b19134
U014722NAP101001-001Prpf4b;Prpk;TC907353,TC825907,TC825903Q61136U,F,22.5712.52933.05433.252.93893.13093.1949
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016964
(v1.0)
1425497_a_atMm.10027Prpf4bNM_013830.219134
31.12545.375118.47580.879.175
0016964
(v1.0)
1451909_a_atMm.10027Prpf4bNM_013830.219134
82.42592.125114.775162.45110.575
0016964
(v1.0)
1455696_a_atMm.10027Prpf4bNM_013830.219134
19.82519.5215.1169.825123.45
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0016964
(v1.0)
A_52_P643359Prpf4bNM_01383019134
11P0.3560.0711P
Proteome N/A